Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 947538..948192 Replicon chromosome
Accession NZ_CP062705
Organism Escherichia coli O157:H7 strain Z1833

Toxin (Protein)


Gene name cptA Uniprot ID S1PAM6
Locus tag ILQ61_RS04640 Protein ID WP_000244781.1
Coordinates 947785..948192 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag ILQ61_RS04635 Protein ID WP_000354046.1
Coordinates 947538..947804 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ILQ61_RS04615 943626..945059 - 1434 WP_001310226.1 6-phospho-beta-glucosidase BglA -
ILQ61_RS04620 945104..945415 + 312 WP_001182957.1 N(4)-acetylcytidine aminohydrolase -
ILQ61_RS04625 945579..946238 + 660 WP_000250274.1 hemolysin III family protein -
ILQ61_RS04630 946315..947295 - 981 WP_000886053.1 tRNA-modifying protein YgfZ -
ILQ61_RS04635 947538..947804 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
ILQ61_RS04640 947785..948192 + 408 WP_000244781.1 protein YgfX Toxin
ILQ61_RS04645 948232..948753 - 522 WP_001055874.1 flavodoxin FldB -
ILQ61_RS04650 948865..949761 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
ILQ61_RS04655 949786..950496 + 711 WP_000715214.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
ILQ61_RS04660 950502..952235 + 1734 WP_000813185.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16061.99 Da        Isoelectric Point: 11.5202

>T175437 WP_000244781.1 NZ_CP062705:947785-948192 [Escherichia coli O157:H7]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T175437 NZ_CP081946:1017919-1018197 [Pseudomonas sp. DR48]
ATGATCAGATCCTTTCAACACAAAGGCCTGCGTGGCTTCTATGAAACAGGTTCGACTCGTGGGATCCGCGCAGACCATGC
GAAGCGCCTGTCTCGAATGCTTCAGTTCATGGACCGGGCGGTACTGCCAGGCGACCTCGACCTGCCGGGATGGCGATTGC
ACCCACTCAAGGGTGAGTTGGCCGACTATTGGTCGCTGAGTGTTTCAGGAAACTGGCGGGTTATTTTTCGTTTTATCGGC
TCGGATATCGAACTGGTCGACTATCTGGACTACCACTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT175437 WP_000354046.1 NZ_CP062705:947538-947804 [Escherichia coli O157:H7]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT175437 NZ_CP081946:1018211-1018498 [Pseudomonas sp. DR48]
ATGCCCTTGCACAACCCGCCACACCCTGGCGAAACACTGTTGACGGATGTTTTGCCCGAGCTTGGCATCAGTGTCGCTGA
GTTGGCTCGCCACCTTGGGTTTGCACGCCCGCATCTTTCGCGAGTCCTGCATGGTCACGCGCCAATCAGCCCTGACCTGG
CGGTACGCCTGGAGCGGGCCGGGATTGGTAAAGCCCGGATGTGGCTCGGTGTACAGACCGACTACGATCTTTGGCAAGCT
GAGCATCGTGAGCAACCGGCTATCGAACCTATTGCTGCCCACGCCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB S1PAM6

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References