Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2296247..2296770 Replicon chromosome
Accession NZ_CP062411
Organism Staphylococcus aureus strain NAS_AN_204

Toxin (Protein)


Gene name relE Uniprot ID A0A3A5LQI3
Locus tag IF728_RS11340 Protein ID WP_000074049.1
Coordinates 2296504..2296770 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID W8TQT5
Locus tag IF728_RS11335 Protein ID WP_000587616.1
Coordinates 2296247..2296504 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IF728_RS11320 (2292745) 2292745..2293494 - 750 WP_000072461.1 CPBP family lipoprotein N-acylation protein LnsB -
IF728_RS11325 (2293689) 2293689..2295266 + 1578 WP_000143494.1 FMN-binding glutamate synthase family protein -
IF728_RS11330 (2295434) 2295434..2295889 - 456 WP_000732076.1 DUF1307 domain-containing protein -
IF728_RS11335 (2296247) 2296247..2296504 + 258 WP_000587616.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
IF728_RS11340 (2296504) 2296504..2296770 + 267 WP_000074049.1 Txe/YoeB family addiction module toxin Toxin
IF728_RS11345 (2297125) 2297125..2298201 + 1077 WP_001076673.1 M42 family metallopeptidase -
IF728_RS11350 (2298449) 2298449..2299111 + 663 WP_000923526.1 ATP-binding cassette domain-containing protein -
IF728_RS11355 (2299104) 2299104..2299880 + 777 WP_000072149.1 iron export ABC transporter permease subunit FetB -
IF728_RS11360 (2300276) 2300276..2301463 + 1188 WP_240053152.1 MFS transporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(4-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10676.24 Da        Isoelectric Point: 10.1597

>T175063 WP_000074049.1 NZ_CP062411:2296504-2296770 [Staphylococcus aureus]
MSNYTVKIKNSAKSDLRKIKHSYLKKSFLEIVETLKNDPYKITQSFEKLEPKYLERYSRRINHQHRVVYTVDDRNKEVLI
LSAWSHYD

Download         Length: 267 bp

>T175063 NZ_CP081762:2193464-2193567 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9774.73 Da        Isoelectric Point: 4.1353

>AT175063 WP_000587616.1 NZ_CP062411:2296247-2296504 [Staphylococcus aureus]
MIITSPTEARKDFYQLLKNVNNNHEPIYISGNNAENNAVIIGLEDWKSIQETIYLESTGTMDKVREREKDNSGTTNIDDI
DWDNL

Download         Length: 258 bp

>AT175063 NZ_CP081762:c2193605-2193334 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A3A5LQI3

Antitoxin

Source ID Structure
PDB 7V6W
PDB 7V5Z
PDB 7V5Y
AlphaFold DB W8TQT5

References