Detailed information of TA system TA174662

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): tsbAT/-
• Location: 122512..123288
• Replicon: chromosome
• Accession: NZ_CP062370
• Organism: Staphylococcus aureus strain NAS_AN_111

Toxin (Protein)

• Gene name: tsbT
• Uniprot ID: X5E2E6
• Locus tag: IF711_RS00785
• Protein ID: WP_000031108.1
• Coordinates: 123136..123288 (+)
• Length: 51 a.a.

Antitoxin (Protein)

• Gene name: tsbA
• Uniprot ID: W8U4V4
• Locus tag: IF711_RS00780
• Protein ID: WP_001251224.1
• Coordinates: 122512..123111 (+)
• Length: 200 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
IF711_RS00760 (118428)	118428..119885	+	1458	WP_000649908.1	ABC transporter permease subunit	-
IF711_RS00765 (119878)	119878..120600	+	723	WP_000590809.1	amino acid ABC transporter ATP-binding protein	-
IF711_RS00770 (120751)	120751..121878	+	1128	WP_000379980.1	tRNA epoxyqueuosine(34) reductase QueG	-
IF711_RS00775 (121883)	121883..122353	+	471	WP_000181394.1	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	-
IF711_RS00780 (122512)	122512..123111	+	600	WP_001251224.1	glucosamine-6-phosphate isomerase	Antitoxin
IF711_RS00785 (123136)	123136..123288	+	153	WP_000031108.1	SAS053 family protein	Toxin
IF711_RS00790 (123836)	123836..124231	+	396	WP_000901023.1	hypothetical protein	-
IF711_RS00795 (124427)	124427..125812	+	1386	WP_000116228.1	class II fumarate hydratase	-
IF711_RS00800 (126265)	126265..127086	-	822	WP_000669376.1	RluA family pseudouridine synthase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

No domain identified.

Antitoxin

• Glucosamine-6-phosphate isomerase (124-196)

Sequences

Toxin

Protein

• Length: 51 a.a.
• Molecular weight: 5936.28 Da
• Isoelectric Point: 3.8962

>T174662 WP_000031108.1 NZ_CP062370:123136-123288 [Staphylococcus aureus]
MSKDKDPKLNYHEEENSMVTDFEDLKELGKEMEQISDQNDQEKNSEEDSQ

Nucleotide

• Length: 153 bp

>T174662 NZ_CP081314:c4837613-4837227 [Citrobacter farmeri]
ATGCACAAGAAACCCGTGCTGTTCGATACCAATATCCTGATTGATTTATTTAGCGGTCATCAGGAAGCGCAGCGAGCACT
GGAAGCGTTTCCGCCGCAGAATGCCATCAGCCTGATCACCTGGATGGAAGTGATGGTGGGAGCAAAAAAATACCATCAGG
AATATCGTACGCGCGTGGCGTTGAGTGCGTTCAACATCATCGGTGTATCACCGGAAATTGCCGAGCGAAGCGTGAATCTC
AGGCAGGAATATAGGATGAAACTTCCGGACGCGATCATTCTTGCCACCGCGCAGATTCATCGGTTTGCGCTTGTGACGCG
CAATACCAGGGATTTTGCGGGGATCCCTGGTGTCATCACGCCTTATCAGTTGCAGACCGGACGGTAA

Antitoxin

Protein

• Length: 200 a.a.
• Molecular weight: 22343.47 Da
• Isoelectric Point: 5.1445

>AT174662 WP_001251224.1 NZ_CP062370:122512-123111 [Staphylococcus aureus]
MAMNFKVFDNSQLVAEYAADIIRKQFNNNPTTIAGFHLDTDQAPVLDELKKNVEKHAVDFSQINILDYDDKKSYFEALGV
PAGQVYPIAYEKDAIELIADKIKTKENKGKLTLQVVSIDEQGKLNVSIRQGLMEAREIFLVVTGANKRDVVEKLYQENGK
TSFEPADLKAHRMVNVILDKEAAAGLPEDVKAYFTSRFA

Nucleotide

• Length: 600 bp

>AT174662 NZ_CP081314:c4837852-4837613 [Citrobacter farmeri]
ATGGCTGGAATGGACATGGGCAGAATATTACTCGACTTATCCGATGAGGCGATCAAACGCCTTGACGATCTCAAGCAGCT
GCGGAATCTGCCGCGTGCGGAGTTGCTGCGCGAAGCAGTGGAACAGTACCTTGAAAGGCAAGGCCAGGCTGAAACCATGA
TTTCCAATGCGCTAGGGATCTGGCAAGGCTGTGAAGAAGATGGCGTTGAGTATCAGAAGACGTTGCGCGAGGAATGGTAA

Structures

Toxin

• AlphaFold DB: X5E2E6

Antitoxin

• AlphaFold DB: W8U4V4