Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | vapBC/PIN-MazE |
Location | 2573242..2573875 | Replicon | chromosome |
Accession | NZ_CP062255 | ||
Organism | Xanthomonas sp. gxlp16 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | IG630_RS11280 | Protein ID | WP_015463212.1 |
Coordinates | 2573242..2573655 (-) | Length | 138 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | M4TWF0 |
Locus tag | IG630_RS11285 | Protein ID | WP_015463213.1 |
Coordinates | 2573642..2573875 (-) | Length | 78 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
IG630_RS11265 | 2568934..2571114 | + | 2181 | WP_011051394.1 | TonB-dependent siderophore receptor | - |
IG630_RS11270 | 2571323..2572837 | + | 1515 | WP_015463210.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
IG630_RS11275 | 2572853..2573215 | - | 363 | WP_015463211.1 | DUF3742 family protein | - |
IG630_RS11280 | 2573242..2573655 | - | 414 | WP_015463212.1 | PIN domain-containing protein | Toxin |
IG630_RS11285 | 2573642..2573875 | - | 234 | WP_015463213.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
IG630_RS11290 | 2574133..2575164 | + | 1032 | WP_194163849.1 | DUF4917 family protein | - |
IG630_RS11295 | 2575297..2575695 | - | 399 | WP_099521978.1 | hypothetical protein | - |
IG630_RS11300 | 2576147..2576722 | + | 576 | WP_011051400.1 | sigma-70 family RNA polymerase sigma factor | - |
IG630_RS11305 | 2576703..2577752 | + | 1050 | WP_011051401.1 | FecR domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 138 a.a. Molecular weight: 15221.65 Da Isoelectric Point: 6.3225
>T174182 WP_015463212.1 NZ_CP062255:c2573655-2573242 [Xanthomonas sp. WG16]
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV
MAAGKGKVFLDSNVVLYLLSEDAVKADGAEALLQRRPVISVQVLNEVTHVCVRKLKMGWDEVGQFLALVRSFCKIVPLTV
DVHDRARQLAERHQLSFYDACIVAAAAIEGCQTLYSEDMHHGLIIEESLSIRNPFNV
Download Length: 414 bp
>T174182 NZ_CP080566:c2175507-2175181 [Staphylococcus aureus]
ATGAATCGGGAAATTAAAGATTTATTTAGCGATTTAAAGTTGTTGAAAGATAGTTTTGAGGATTTAAAGGATAGTAATGG
TTGGCATTTTGATGAGCTATATCCATATGAACCAAATCATGTCTTAAATAAAGATGAATTAATTGGAGAGGGATTTTCTT
ATCATGAGAGACGTATTCACAATAATCAAATGTTTGATTTATTCCATCTCTATATAGAGCAGTTCGATAATATTATCGAA
AAGTTTTATGAAATAGAAAAAGCATCATCTGAGAACTTTGGCGAGGAATCAGATGACGCAAAGAATTCAATAAAAGTAGC
AGAGTAA
ATGAATCGGGAAATTAAAGATTTATTTAGCGATTTAAAGTTGTTGAAAGATAGTTTTGAGGATTTAAAGGATAGTAATGG
TTGGCATTTTGATGAGCTATATCCATATGAACCAAATCATGTCTTAAATAAAGATGAATTAATTGGAGAGGGATTTTCTT
ATCATGAGAGACGTATTCACAATAATCAAATGTTTGATTTATTCCATCTCTATATAGAGCAGTTCGATAATATTATCGAA
AAGTTTTATGAAATAGAAAAAGCATCATCTGAGAACTTTGGCGAGGAATCAGATGACGCAAAGAATTCAATAAAAGTAGC
AGAGTAA
Antitoxin
Download Length: 78 a.a. Molecular weight: 8663.97 Da Isoelectric Point: 8.7848
>AT174182 WP_015463213.1 NZ_CP062255:c2573875-2573642 [Xanthomonas sp. WG16]
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG
MQVAKWGNSLAVRLPSSLVEALELREGDDIEIVVDDPRLFAVRKKPGPEAMLERLRAFRGKLPADFKFNRDEANGRG
Download Length: 234 bp
>AT174182 NZ_CP080566:c2175695-2175510 [Staphylococcus aureus]
ATAGAACACGTGGTTTATCAACTTGAGTTAAGTGTCGTGAATAATTTGGAAAGTTATGAACACACAGAATATGTTAATGG
TATTGAAGTGGTTTCAGAGATCAGTCGTGAAAAGCACTTAGAATTGATAATGAAATGGTGCGCACAAGAATTAAAGAATA
ATTTTCAATTAGAGAAAGGAGAATAA
ATAGAACACGTGGTTTATCAACTTGAGTTAAGTGTCGTGAATAATTTGGAAAGTTATGAACACACAGAATATGTTAATGG
TATTGAAGTGGTTTCAGAGATCAGTCGTGAAAAGCACTTAGAATTGATAATGAAATGGTGCGCACAAGAATTAAAGAATA
ATTTTCAATTAGAGAAAGGAGAATAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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