Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3711927..3712395 Replicon chromosome
Accession NZ_CP062253
Organism Pseudomonas gozinkensis strain IzPS32d

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag IHQ43_RS16295 Protein ID WP_192565016.1
Coordinates 3712111..3712395 (+) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag IHQ43_RS16290 Protein ID WP_192561295.1
Coordinates 3711927..3712121 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHQ43_RS16270 3707559..3708527 - 969 WP_192561291.1 Gfo/Idh/MocA family oxidoreductase -
IHQ43_RS16275 3708537..3709424 - 888 WP_192561292.1 Dyp-type peroxidase -
IHQ43_RS16280 3709481..3710515 - 1035 WP_192561293.1 AraC family transcriptional regulator -
IHQ43_RS16285 3710727..3711674 + 948 WP_192561294.1 transporter -
IHQ43_RS16290 3711927..3712121 + 195 WP_192561295.1 stability determinant Antitoxin
IHQ43_RS16295 3712111..3712395 + 285 WP_192565016.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10680.08 Da        Isoelectric Point: 9.6587

>T174167 WP_192565016.1 NZ_CP062253:3712111-3712395 [Pseudomonas gozinkensis]
MPLEWSDQALDDLADIIDYIEQYNSNASTALQHKVGAATQRLSSIPYGYRSGRAPGTREMVVNPNYLLVYRVNGRIKILT
LVHTRRQYPRTSSP

Download         Length: 285 bp

>T174167 NZ_CP080564:c1987376-1987200 [Staphylococcus aureus]
TTGGATAGATGGTGGCTATCTGAGTATAAGGAGGTGGTGCCTATGGTGGCATTACTGAAATCTTTAGAAAGGAGACGCCT
AATGATTACAATTAGTACCATGTTGCAGTTTGGTTTATTCCTTATTGCATTGATAGGTCTAGTAATCAAGCTTATTGAAT
TAAGCAATAAAAAATAA

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7566.47 Da        Isoelectric Point: 4.6128

>AT174167 WP_192561295.1 NZ_CP062253:3711927-3712121 [Pseudomonas gozinkensis]
MSLLLSPFYSDFESEEEAESYDRWFRAKVQAVLDDPRPGIPHEEAMVRLDQLLEERRKNRRAAA

Download         Length: 195 bp

>AT174167 NZ_CP080564:1987077-1987132 [Staphylococcus aureus]
AAAAAGGGCAACATGCGCAAACATGTTACCCTAATGAGCCCGTTAAAAAGACGGTG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References