Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2323765..2324245 Replicon chromosome
Accession NZ_CP062253
Organism Pseudomonas gozinkensis strain IzPS32d

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag IHQ43_RS10405 Protein ID WP_192564253.1
Coordinates 2323765..2324049 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag IHQ43_RS10410 Protein ID WP_192564254.1
Coordinates 2324039..2324245 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHQ43_RS10365 2318841..2319314 + 474 WP_192564248.1 type II secretion system GspH family protein -
IHQ43_RS10370 2319320..2319694 + 375 WP_011333435.1 type II secretion system GspH family protein -
IHQ43_RS10375 2319669..2320220 + 552 WP_192564249.1 type II secretion system GspH family protein -
IHQ43_RS10380 2320217..2320609 + 393 WP_039769043.1 curli production assembly/transport protein CsgE -
IHQ43_RS10385 2320606..2321037 + 432 WP_192564250.1 curli production assembly protein CsgF -
IHQ43_RS10390 2321067..2321927 + 861 WP_115077264.1 curli production assembly/transport protein CsgG -
IHQ43_RS10395 2322981..2323361 + 381 WP_192564251.1 hypothetical protein -
IHQ43_RS10400 2323433..2323624 + 192 WP_192564252.1 antitoxin -
IHQ43_RS10405 2323765..2324049 - 285 WP_192564253.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
IHQ43_RS10410 2324039..2324245 - 207 WP_192564254.1 antitoxin Antitoxin
IHQ43_RS10415 2324513..2325964 - 1452 WP_192564255.1 curlin -
IHQ43_RS10420 2325991..2326455 - 465 WP_007956150.1 curlin -
IHQ43_RS10425 2326558..2328792 - 2235 WP_192564256.1 cadherin-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10928.79 Da        Isoelectric Point: 10.9931

>T174165 WP_192564253.1 NZ_CP062253:c2324049-2323765 [Pseudomonas gozinkensis]
MQIKWRPKARVELSKILKYIGERNFVAATALHKPVVKTTSALPWHPHLYRKGRSPGTREIVVSPNYLVVYQVADRIEIVS
ILHARQEYPRRDPS

Download         Length: 285 bp

>T174165 NZ_CP080564:1821242-1821337 [Staphylococcus aureus]
GTGATGCTTATTTTCGTTCACATCATAGCACCAGTCATCAGTGGCTGTGCCATTGCGTTTTTTTCTTATTGGCTAAGTAG
ACGCAATACAAAATAG

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7552.46 Da        Isoelectric Point: 3.9012

>AT174165 WP_192564254.1 NZ_CP062253:c2324245-2324039 [Pseudomonas gozinkensis]
MIDPSLIDPLCPVVSDLAPEEQAASYDRWFRAEVQASLDDPRPSIPHEQVIAEINALMESMRKSADAD

Download         Length: 207 bp

>AT174165 NZ_CP080564:c1821428-1821365 [Staphylococcus aureus]
AACGAAAATAAGTATTTACTTATACACCAATAAAAATCCCCTCACTATTTGCGGTAGTGAGGGG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References