174087

Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) rnlAB/RnlA-RnlB
Location 2760476..2761913 Replicon chromosome
Accession NZ_CP062249
Organism Escherichia coli strain AML002_ev01

Toxin (Protein)


Gene name rnlA Uniprot ID P52129
Locus tag IHN46_RS13440 Protein ID WP_000155570.1
Coordinates 2760476..2761549 (+) Length 358 a.a.

Antitoxin (Protein)


Gene name rnlB Uniprot ID P52130
Locus tag IHN46_RS13445 Protein ID WP_000461704.1
Coordinates 2761542..2761913 (+) Length 124 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN46_RS13425 2755909..2758098 - 2190 WP_000136402.1 DEAD/DEAH box helicase -
IHN46_RS13430 2758095..2759711 - 1617 WP_000445380.1 anti-bacteriophage protein AbpA -
IHN46_RS13435 2760071..2760334 - 264 WP_000502050.1 DUF1524 domain-containing protein -
IHN46_RS13440 2760476..2761549 + 1074 WP_000155570.1 type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA Toxin
IHN46_RS13445 2761542..2761913 + 372 WP_000461704.1 type II toxin-antitoxin system antitoxin RnlB Antitoxin
IHN46_RS13450 2762268..2763131 + 864 WP_000787597.1 GTPase family protein -
IHN46_RS13455 2763223..2764044 + 822 WP_000197391.1 DUF945 domain-containing protein -
IHN46_RS13460 2764261..2764962 + 702 WP_000189409.1 WYL domain-containing protein -
IHN46_RS13465 2765003..2765239 + 237 WP_001144029.1 hypothetical protein -
IHN46_RS13470 2765239..2765682 + 444 WP_000824222.1 hypothetical protein -
IHN46_RS13475 2765706..2766173 + 468 WP_000702495.1 hypothetical protein -
IHN46_RS13480 2766398..2766712 - 315 WP_000065803.1 arsenate reductase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 358 a.a.        Molecular weight: 40061.13 Da        Isoelectric Point: 6.8293

>T174087 WP_000155570.1 NZ_CP062249:2760476-2761549 [Escherichia coli]
MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGLRVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSL
GQELADHLFETINPAEFEQVNMVLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK
LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADAYPHLHVTAEKLLVSGLCVKLAA
PDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHS
LFHMETVVDASRMISDMARLMGKATRAWGIIKDLYIV

Download         Length: 1074 bp

>T174087 NZ_CP080536:c928188-927934 [Acidithiobacillus ferriphilus]
GTGAGGCTGATCTTCTCTGACGATGCATGGGAAGACTACCTATATTGGCAGAAGCAAGACAAGCGCGTGGTCGAGCGAAT
CAATAAGCTGATACGTGAGACACAGCGTGAACCCTTCGCGGGAGTTGGCAAACCCGAAGCACTGAAGCATGCTCTTTCAG
GATTTTGGTCACGCCGTATTACAGATGAGCATCGCATGGTGTATCGAATAGAAGGTGATGCATTGATGATTGCTCAGTTG
CGTTTCCACTACTGA

Antitoxin


Download         Length: 124 a.a.        Molecular weight: 13664.69 Da        Isoelectric Point: 4.2391

>AT174087 WP_000461704.1 NZ_CP062249:2761542-2761913 [Escherichia coli]
MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKI
IDEQDVPTHILSKLTFTLRNHPEYLEASVLSPDDVRQVLSMDF

Download         Length: 372 bp

>AT174087 NZ_CP080536:c928436-928185 [Acidithiobacillus ferriphilus]
ATGGATGCGATTACCTATACCACCGTTCGTGCAAATCTCGCCAGCGCCATGGACCGCGTTTGCGACGACCACGAACCCTT
GATCATTACCCGCAATGGCGAACAGTCCGTCGTGATGCTCTCGCTCGAAGACTACAAGGCGCTGGAGGAAACCGCCTACC
TCTTGCGTACCCCCGCCAACGCCAAGCGCCTTCTCGCTGCCGTCGCACAACTGAACGCCGGTAAAGGCGTTGAGCGGAAG
CTGGCGAAGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 6Y2R
PDB 7AEX
PDB 6Y2Q
PDB 4I8O
PDB 6Y2P
PDB 6Y2S


Antitoxin

Source ID Structure
PDB 6Y2P
AlphaFold DB A0A373F4G4

References