Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 1504742..1505380 Replicon chromosome
Accession NZ_CP062249
Organism Escherichia coli strain AML002_ev01

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag IHN46_RS07365 Protein ID WP_000813794.1
Coordinates 1504742..1504918 (+) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag IHN46_RS07370 Protein ID WP_001270286.1
Coordinates 1504964..1505380 (+) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN46_RS07345 1500361..1501575 - 1215 WP_001326689.1 BenE family transporter YdcO -
IHN46_RS07350 1501628..1502164 + 537 WP_000429155.1 DNA-binding transcriptional regulator SutR -
IHN46_RS07355 1502237..1504198 + 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
IHN46_RS07360 1504290..1504520 - 231 WP_000494244.1 YncJ family protein -
IHN46_RS07365 1504742..1504918 + 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
IHN46_RS07370 1504964..1505380 + 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
IHN46_RS07375 1505459..1506865 + 1407 WP_000760626.1 PLP-dependent aminotransferase family protein -
IHN46_RS07380 1507110..1508255 + 1146 WP_000047424.1 ABC transporter substrate-binding protein -
IHN46_RS07385 1508273..1509286 + 1014 WP_000220396.1 ABC transporter ATP-binding protein -
IHN46_RS07390 1509287..1510228 + 942 WP_001251304.1 ABC transporter permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T174074 WP_000813794.1 NZ_CP062249:1504742-1504918 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T174074 NZ_CP080530:c78960-78091 [Mesorhizobium sp. AR02]
ATGGCTAAGGAGATCAAGAACATCGGCGCCTCGGTGCGCGCACGCCTGCTGCAACTCGCCAAGGCAAGTGGCCAGAGCTT
CGACCTGGTTCTGACACGCTTCGCGCTGGAGCGGCTGCTCTTCCGGCTCAGCCAGTCACGGCATGCCGACCGCTTCGTGC
TGAAGGGCGCGATGCTGATGATGAGCTGGTTCGATGATCCGCACCGCGGCACCCGCGACCTTGACCTGCTGGGTTTTGGC
GATCCGAGCGCGGAGCCGATGCTGGCGACGTTTCGGGAGATCCTGGCGCAGGACGCCGGCGATGGCGTCGAGTTCGACGC
TGACGCACTTCGCGTCGACCGCATTCGCGAGGAGCTGGAATATGGCGGGCTGCGACGGAGGACGACGGCCTCGATCAGCG
GCGCCCGGATCAGCCTGACGATCGACATCGGCTTTGGCGATGCGCTGGAGCCTGGAACTGAGGATCTGGACTATCCGTCC
ATGCTGGACTTTCCCATGCCCCGGCTGCGGGGCTATGCGCGGGAAACCGTCATTGCCGAGAAATTCCAGGCGATGGTGGC
GCTGGGGCGGGCGAATAGCCGGATGAAGGACTTCTACGACATCTGGATTCTCAGTCGCTCGTTCACCTTCGACGACGACA
GGCTGCCACGAGCGATTTCCGCCACCTTCGCGCGACGCGGAACAGCAATACCTCAAGACCTGCCCGATGCGCTGACACCA
GCCTTTGCCGAGGATGCGCAAAAGCAGCGACAGTGGCGTGCGTTTGTCGGAGATGTCGCCCACGATCCGGGTGATCTGGG
AAACGTCACTAGAGATATAGCGGCATTCCTCATGCGCCACGCGGTCTCAGCAGCGAGCTTGGGTAAATGA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT174074 WP_001270286.1 NZ_CP062249:1504964-1505380 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT174074 NZ_CP080530:c79558-78953 [Mesorhizobium sp. AR02]
ATGTCCCAACGCCAGATTGCCCATACCGTGCTGACCGCGCGCGGAATTTCGCGTCTGGCAGAGCTGCGCGAGGCGGGCGT
AACAGCCGCCACCATGAGTCGCATGGAACGCGACGGCGAGGTGCTTCGGCTCGCGCGAGGACTTTATCAACTTTCCGATG
CGCCCCTCGACGTTCACCACAGTCTCGCAGAGGCCGCCAAACGGGTTCCCAAAGGCGTGGTTTGCCTCGTTTCGGCCCTG
GCTTTCCATGGTCTGACTGATCAGCTCCCGAGGCAGGTTTGGCTCGCCGTGGGCCAGAAGGACTGGCCTCCCAAACCCGA
CGGCACACCCATTCGCATCGTGCGTTTTACCGAACGTCTGCTCAACGACAGCGTCGAAACTCATGTCATCGAAGGCGTGC
CCATAAAGGTTTTTGGCGTCATCAAAACTGTCGCGGACTGCTTCCGATATCGCAACAAGATCGGCCTTTCGGTGGCGATC
GAGGGTCTCCAGGAAGCACTCCGCCAGCGCAAGGCCACGCCCGGCGAAATTGCCAGGCAGGCCGAGCATGGAGGTGTCTC
TACGGTGATCCGGCCGTATCTTGAGGCACTCACCGCCAATGGCTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References