Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) yfjZ-ypjF/CbtA-CbeA
Location 2770473..2771140 Replicon chromosome
Accession NZ_CP062245
Organism Escherichia coli strain AML003_ev01

Toxin (Protein)


Gene name ypjF Uniprot ID Q46953
Locus tag IHN50_RS13510 Protein ID WP_001094400.1
Coordinates 2770811..2771140 (+) Length 110 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID P52141
Locus tag IHN50_RS13505 Protein ID WP_000072690.1
Coordinates 2770473..2770790 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
IHN50_RS13475 2765525..2766534 - 1010 Protein_2634 arsenic transporter -
IHN50_RS13480 2766676..2768379 + 1704 WP_000896263.1 hypothetical protein -
IHN50_RS13485 2768951..2769174 + 224 Protein_2636 DUF905 family protein -
IHN50_RS13490 2769277..2769735 + 459 WP_000211841.1 antirestriction protein -
IHN50_RS13495 2769744..2770226 + 483 WP_001407480.1 RadC family protein -
IHN50_RS13500 2770235..2770435 + 201 WP_001395452.1 DUF987 domain-containing protein -
IHN50_RS13505 2770473..2770790 + 318 WP_000072690.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
IHN50_RS13510 2770811..2771140 + 330 WP_001094400.1 type IV toxin-antitoxin system toxin YpjF Toxin
IHN50_RS13515 2771504..2776084 - 4581 WP_010723187.1 adhesin-like autotransporter YpjA/EhaD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-108)

Antitoxin

Antitoxin CbeA

(5-104)


Sequences

Toxin        


Download         Length: 110 a.a.        Molecular weight: 12308.21 Da        Isoelectric Point: 7.2761

>T173916 WP_001094400.1 NZ_CP062245:2770811-2771140 [Escherichia coli]
MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGF
SWQQQSPYISVVDILRARRSTGLLKTNVK

Download         Length: 330 bp

>T173916 NZ_CP080387:c389502-389233 [Agrobacterium cucumeris]
TTGACCTGGAAAATTGAGTTTCAGCACCGCGCCGTCAAGCAGCTTGCAAAGCTGTCCAAGCAAGATGCGAACCGCATCGT
TTCGTTTCTCGCAGATCGAGTGGTCCAAGATGAAAATCCTCGCAGGACAGGCACCGCCCTGCAAGGCTCCGAACTCGGCA
ATTATTGGCGTTACCGGGTAGGCGATTATCGCATCATCTGCGATATACAAGATCACAAGCTCGTCGTGCTGGTGGTCGAA
ATCGGTCATCGCCGTGAAATCTACCGTTAG

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11737.27 Da        Isoelectric Point: 6.4630

>AT173916 WP_000072690.1 NZ_CP062245:2770473-2770790 [Escherichia coli]
MSNTTWGLQRDITPRLGARLVQEGNQLHYLADRASITGKFSDAECPKLDVVFPHFISQIESMLTTGELNPRHAQCVTLYH
NGFTCEADTLGSCGYVYIAVYPTQR

Download         Length: 318 bp

>AT173916 NZ_CP080387:c389719-389486 [Agrobacterium cucumeris]
ATGAGCAAACAGACGGCTATTCGCCTGCCGGATGAGACCTATGAGCGGCTGAAAGCGCTTTCGGAGCGCACCGGCCGCAC
CTCCGCCTATTATATCCGCGAGGCGATCGAGAAGCATATCGAGGATATGGAAGATCTTTATCTCGCCGAAGAGGCGACGC
GGCGGCAGATTGCAAACAATGAGCGCACCTATACTCTGGAAGAAGTGATGCGCAATCTTGACCTGGAAAATTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A373F4I3

Antitoxin

Source ID Structure
PDB 2EA9
PDB 2JN7
AlphaFold DB P52141

References