Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1949756..1950024 | Replicon | chromosome |
| Accession | NZ_CP062228 | ||
| Organism | Escherichia coli strain UTI89 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1949794..1949896 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1949756..1950024 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IFE20_RS09615 | 1946913..1948352 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IFE20_RS09620 | 1948470..1948706 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IFE20_RS09625 | 1948811..1949002 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IFE20_RS09630 | 1949003..1949659 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 1949756..1950024 | + | 269 | - | - | Antitoxin |
| - | 1949794..1949896 | - | 103 | - | - | Toxin |
| IFE20_RS09635 | 1950054..1950395 | - | 342 | WP_000984819.1 | YebY family protein | - |
| IFE20_RS09640 | 1950408..1951280 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| IFE20_RS09645 | 1951284..1951658 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| IFE20_RS09650 | 1951797..1952027 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IFE20_RS09655 | 1952129..1952785 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| IFE20_RS09660 | 1952808..1953470 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173601 NZ_CP062228:c1949896-1949794 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT173601 NZ_CP062228:1949756-1950024 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
