Detailed information of TA system TA173600

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): hipBA/HipA-HipB
• Location: 1662680..1664268
• Replicon: chromosome
• Accession: NZ_CP062228
• Organism: Escherichia coli strain UTI89

Toxin (Protein)

• Gene name: hipA
• Uniprot ID: B7MMY1
• Locus tag: IFE20_RS08165
• Protein ID: WP_001125475.1
• Coordinates: 1662680..1664002 (-)
• Length: 441 a.a.

Antitoxin (Protein)

• Gene name: hipB
• Uniprot ID: -
• Locus tag: IFE20_RS08170
• Protein ID: WP_001332145.1
• Coordinates: 1664002..1664268 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
IFE20_RS08130	1658236..1658469	-	234	WP_000473544.1	hypothetical protein	-
IFE20_RS08135	1658504..1658755	-	252	WP_000381239.1	membrane protein	-
IFE20_RS08140	1658758..1659075	-	318	WP_000073835.1	hypothetical protein	-
IFE20_RS08145	1659087..1660139	-	1053	WP_000568110.1	hypothetical protein	-
IFE20_RS08150	1660311..1660757	+	447	WP_000527682.1	helix-turn-helix domain-containing protein	-
IFE20_RS08155	1660857..1661279	+	423	WP_000089310.1	hypothetical protein	-
IFE20_RS08160	1661387..1662496	+	1110	WP_001555908.1	hypothetical protein	-
IFE20_RS08165	1662680..1664002	-	1323	WP_001125475.1	type II toxin-antitoxin system serine/threonine protein kinase toxin HipA	Toxin
IFE20_RS08170	1664002..1664268	-	267	WP_001332145.1	type II toxin-antitoxin system antitoxin HipB	Antitoxin
IFE20_RS08175	1664576..1665334	+	759	WP_001286588.1	trans-aconitate 2-methyltransferase	-
IFE20_RS08180	1665338..1666252	-	915	WP_001306069.1	bestrophin family protein	-
IFE20_RS08185	1666449..1667900	-	1452	WP_000854637.1	tagaturonate reductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Genomic island	-	fimA	1640460..1664268	23808

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• HipA-like, C-terminal (149-401)

Antitoxin

• Cro/C1-type helix-turn-helix domain (18-69)

Sequences

Toxin

Protein

• Length: 441 a.a.
• Molecular weight: 49426.24 Da
• Isoelectric Point: 8.9380

>T173600 WP_001125475.1 NZ_CP062228:c1664002-1662680 [Escherichia coli]
MPKLVTWMNNQRVGELTKLANGAHTFKYAPEWLASRYARPLSLSLPLQRRNITSDAVFNFFDNLLPDSPIVRDRIVKRYH
AKSRQPFDLLSEIGRDSVGAVTLIPEDETVMCPIMAWEKLTEARLEEVLTAYKADIPLGMIREENDFRISVAGAQEKTAL
LRIGNDWCIPKGITPTTHIIKLPIGEIRQPNATLDLSQSVDNEYYCLLLAKELGLNVPDAEIIKAGRVRALAVKRFDRRW
NTERTVLLRLPQEDMCQTFGLPSSVKYESDGGPGIAQIMAFLMGSSEALKDRYDFMKFQVFQWLIGATDGHAKNFSVFIQ
AGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKTAIDKIYPRHFLATAKVLKFPEVQMHEILSDFARMIP
AALDNVKTSLPTDFPENVVTAVETNVLRLHGRLSREYGIK

Nucleotide

• Length: 1323 bp

>T173600 NZ_CP080249:c2265131-2264922 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATAGATGGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 10016.44 Da
• Isoelectric Point: 6.2267

>AT173600 WP_001332145.1 NZ_CP062228:c1664268-1664002 [Escherichia coli]
MMSFQKIYSPMQLANAMKLVRQQNGWTQSELAKKIGIKQATISNFENNPNNTSLTTFFKILQSLELSMTLCDAKNASPEA
TEQQDLEW

Nucleotide

• Length: 267 bp

>AT173600 NZ_CP080249:c2265436-2265143 [Staphylococcus aureus]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGTGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Structures

Toxin

• AlphaFold DB: A0A0E2L5M8