Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2677825..2678096 Replicon chromosome
Accession NZ_CP062211
Organism Escherichia coli strain L3Cip3

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2677863..2677966 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2677825..2678096 (+)

Genomic Context

IFO96_RS12955IFO96_RS12960IFO96_RS12965--IFO96_RS12990IFO96_RS12995IFO96_RS13000IFO96_RS12970--IFO96_RS12975IFO96_RS12980IFO96_RS12985
Location: 2674982..2676421 (1440 bp)
Type: Others
Protein ID: WP_024190454.1
Location: 2676539..2676775 (237 bp)
Type: Others
Protein ID: WP_001295499.1
Location: 2676880..2677071 (192 bp)
Type: Others
Protein ID: WP_001296140.1
Location: 2677825..2678096 (272 bp)
Type: Antitoxin
Protein ID: -
Location: 2679867..2680097 (231 bp)
Type: Others
Protein ID: WP_000916763.1
Location: 2680199..2680855 (657 bp)
Type: Others
Protein ID: WP_000011652.1
Location: 2680879..2681541 (663 bp)
Type: Others
Protein ID: WP_000944256.1
Location: 2677072..2677728 (657 bp)
Type: Others
Protein ID: WP_000812734.1
Location: 2677863..2677966 (104 bp)
Type: Toxin
Protein ID: -
Location: 2678124..2678465 (342 bp)
Type: Others
Protein ID: WP_000976492.1
Location: 2678478..2679350 (873 bp)
Type: Others
Protein ID: WP_000879285.1
Location: 2679354..2679728 (375 bp)
Type: Others
Protein ID: WP_000204699.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
IFO96_RS129552674982..2676421+1440WP_024190454.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-
IFO96_RS129602676539..2676775+237WP_001295499.1DUF1480 family protein-
IFO96_RS129652676880..2677071+192WP_001296140.1YebW family protein-
IFO96_RS129702677072..2677728-657WP_000812734.1protein-serine/threonine phosphatase-
-2677825..2678096+272--Antitoxin
-2677863..2677966-104--Toxin
IFO96_RS129752678124..2678465-342WP_000976492.1YebY family protein-
IFO96_RS129802678478..2679350-873WP_000879285.1copper homeostasis membrane protein CopD-
IFO96_RS129852679354..2679728-375WP_000204699.1CopC domain-containing protein YobA-
IFO96_RS129902679867..2680097+231WP_000916763.1DNA polymerase III subunit theta-
IFO96_RS129952680199..2680855+657WP_000011652.1carbon-nitrogen hydrolase family protein-
IFO96_RS130002680879..2681541+663WP_000944256.1exodeoxyribonuclease X-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T173540 NZ_CP062211:c2677966-2677863 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT173540 NZ_CP062211:2677825-2678096 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References