Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2124192..2124463 | Replicon | chromosome |
| Accession | NZ_CP062204 | ||
| Organism | Escherichia coli strain C311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2124322..2124425 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2124192..2124463 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IG172_RS10385 | 2120747..2121409 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IG172_RS10390 | 2121433..2122089 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IG172_RS10395 | 2122191..2122421 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IG172_RS10400 | 2122560..2122934 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IG172_RS10405 | 2122938..2123810 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IG172_RS10410 | 2123823..2124164 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2124192..2124463 | - | 272 | - | - | Antitoxin |
| - | 2124322..2124425 | + | 104 | - | - | Toxin |
| IG172_RS10415 | 2124560..2125216 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| IG172_RS10420 | 2125217..2125408 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IG172_RS10425 | 2125513..2125749 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IG172_RS10430 | 2125867..2127306 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T173506 NZ_CP062204:2124322-2124425 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT173506 NZ_CP062204:c2124463-2124192 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
