Detailed information of TA system
Overview
TA module
Type | II | Classification (family/domain) | pemIK/MazF(toxin) |
Location | 2098693..2099332 | Replicon | chromosome |
Accession | NZ_CP062163 | ||
Organism | Brevibacillus sp. JNUCC-41 |
Toxin (Protein)
Gene name | pemK | Uniprot ID | - |
Locus tag | JNUCC41_RS10405 | Protein ID | WP_034306610.1 |
Coordinates | 2098982..2099332 (+) | Length | 117 a.a. |
Antitoxin (Protein)
Gene name | pemI | Uniprot ID | - |
Locus tag | JNUCC41_RS10400 | Protein ID | WP_034306380.1 |
Coordinates | 2098693..2098974 (+) | Length | 94 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
JNUCC41_RS10380 | 2094827..2095417 | - | 591 | WP_192207528.1 | rhomboid family intramembrane serine protease | - |
JNUCC41_RS10385 | 2095526..2095876 | + | 351 | WP_192207529.1 | holo-ACP synthase | - |
JNUCC41_RS10390 | 2096121..2097125 | + | 1005 | WP_192207530.1 | outer membrane lipoprotein carrier protein LolA | - |
JNUCC41_RS10395 | 2097375..2098532 | + | 1158 | WP_192208121.1 | alanine racemase | - |
JNUCC41_RS10400 | 2098693..2098974 | + | 282 | WP_034306380.1 | antitoxin EndoAI | Antitoxin |
JNUCC41_RS10405 | 2098982..2099332 | + | 351 | WP_034306610.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin |
JNUCC41_RS10410 | 2099753..2100580 | + | 828 | WP_192207531.1 | STAS domain-containing protein | - |
JNUCC41_RS10415 | 2100583..2100939 | + | 357 | WP_076373142.1 | STAS domain-containing protein | - |
JNUCC41_RS10420 | 2100943..2101344 | + | 402 | WP_048682056.1 | anti-sigma regulatory factor | - |
JNUCC41_RS10425 | 2101354..2102364 | + | 1011 | WP_192207532.1 | PP2C family protein-serine/threonine phosphatase | - |
JNUCC41_RS10430 | 2102424..2102756 | + | 333 | WP_192207533.1 | anti-sigma factor antagonist | - |
JNUCC41_RS10435 | 2102753..2103226 | + | 474 | WP_098372177.1 | anti-sigma B factor RsbW | - |
JNUCC41_RS10440 | 2103204..2103992 | + | 789 | WP_034306363.1 | RNA polymerase sigma factor SigB | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 117 a.a. Molecular weight: 12955.06 Da Isoelectric Point: 7.2029
>T173466 WP_034306610.1 NZ_CP062163:2098982-2099332 [Brevibacillus sp. JNUCC-41]
IVVKRGDVYFADLSPVVGSEQGGTRPVLILQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEINAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEPMMQKVNEALQISLGLIEF
IVVKRGDVYFADLSPVVGSEQGGTRPVLILQNDIGNRFSPTVIVAAITAQIQKAKLPTHVEINAKKYGFERDSVILLEQI
RTIDKQRLTDKITHLDEPMMQKVNEALQISLGLIEF
Download Length: 351 bp
>T173466 NZ_CP080223:1879221-1879472 [Escherichia coli O141:H4]
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCATAGGAACAGAAAAGGAC
ATTATTGAGTGA
ATGCGTACAATTAGCTACAGCGAAGCGCGTCAGAATTTGTCGGCAACAATGATGAAAGCCGTTGAAGATCATGCCCCGAT
CCTTATTACTCGTCAGAATGGAGAGGCTTGTGTTCTGATGTCACTCGAAGAATACAACTCGCTGGAAGAGACGGCTTATC
TACTGCGCTCCCCCGCTAACGCCCGGAGATTGATGGACTCAATCGATAGCCTGAAATCAGGCATAGGAACAGAAAAGGAC
ATTATTGAGTGA
Antitoxin
Download Length: 94 a.a. Molecular weight: 10713.13 Da Isoelectric Point: 5.9054
>AT173466 WP_034306380.1 NZ_CP062163:2098693-2098974 [Brevibacillus sp. JNUCC-41]
VSESSATREILIRLPQNFLTELDGYASEENVNRSEFIYRATKMYLRERKKKEFRESMKRGYIEMAAINLTIASEAFQAEF
EAGHCVERLVSGG
VSESSATREILIRLPQNFLTELDGYASEENVNRSEFIYRATKMYLRERKKKEFRESMKRGYIEMAAINLTIASEAFQAEF
EAGHCVERLVSGG
Download Length: 282 bp
>AT173466 NZ_CP080223:1879469-1879723 [Escherichia coli O141:H4]
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
GTGAAACTAATCTGGTCTGAGGAATCATGGGATGATTATCTGTACTGGCAGGAAACAGATAAGCGAATTGTTAAAAAGAT
CAATGAACTTATCAAAGATACCCGCAGAACGCCATTTGAAGGTAAGGGGAAGCCAGAACCCCTGAAACATAATTTGTCAG
GTTTCTGGTCCCGACGCATTACAGAGGAGCACCGTCTGGTATACGCGGTTACCGACGATTCACTGCTCATTGCAGCATGT
CGTTATCATTATTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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