Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1912164..1912309 | Replicon | chromosome |
| Accession | NZ_CP061975 | ||
| Organism | Klebsiella pneumoniae strain IR5086 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1912200..1912302 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1912164..1912309 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4I67_RS09280 | 1907294..1909354 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| H4I67_RS09285 | 1909358..1910017 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H4I67_RS09290 | 1910096..1910326 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H4I67_RS09295 | 1910439..1910813 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| H4I67_RS09300 | 1910817..1911686 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| H4I67_RS09305 | 1911703..1912041 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1912164..1912309 | - | 146 | - | - | Antitoxin |
| - | 1912200..1912302 | + | 103 | - | - | Toxin |
| H4I67_RS09310 | 1912678..1912821 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| H4I67_RS09315 | 1912926..1913894 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| H4I67_RS09320 | 1914051..1914704 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| H4I67_RS09325 | 1914701..1914892 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H4I67_RS09330 | 1914990..1915229 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H4I67_RS09335 | 1915345..1916778 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173340 NZ_CP061975:1912200-1912302 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT173340 NZ_CP061975:c1912309-1912164 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
