Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986436..1986581 | Replicon | chromosome |
| Accession | NZ_CP061970 | ||
| Organism | Klebsiella pneumoniae strain IR5755 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986472..1986574 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986436..1986581 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4I70_RS09595 | 1981566..1983626 | + | 2061 | WP_047694778.1 | oligopeptidase B | - |
| H4I70_RS09600 | 1983630..1984289 | - | 660 | WP_102000926.1 | exodeoxyribonuclease X | - |
| H4I70_RS09605 | 1984368..1984598 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H4I70_RS09610 | 1984711..1985085 | + | 375 | WP_023285314.1 | CopC domain-containing protein YobA | - |
| H4I70_RS09615 | 1985089..1985958 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| H4I70_RS09620 | 1985975..1986313 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1986436..1986581 | - | 146 | - | - | Antitoxin |
| - | 1986472..1986574 | + | 103 | - | - | Toxin |
| H4I70_RS09625 | 1986949..1987092 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| H4I70_RS09630 | 1987197..1988165 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H4I70_RS09635 | 1988322..1988975 | + | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| H4I70_RS09640 | 1988972..1989163 | - | 192 | WP_002911395.1 | YebW family protein | - |
| H4I70_RS09645 | 1989261..1989500 | - | 240 | WP_002911393.1 | YebV family protein | - |
| H4I70_RS09650 | 1989616..1991049 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173321 NZ_CP061970:1986472-1986574 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT173321 NZ_CP061970:c1986581-1986436 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
