Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3082777..3082922 | Replicon | chromosome |
| Accession | NZ_CP061965 | ||
| Organism | Klebsiella pneumoniae strain LZK001 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3082784..3082886 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3082777..3082922 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4I72_RS15005 | 3078309..3079742 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H4I72_RS15010 | 3079858..3080097 | + | 240 | WP_002911393.1 | YebV family protein | - |
| H4I72_RS15015 | 3080195..3080386 | + | 192 | WP_002911395.1 | YebW family protein | - |
| H4I72_RS15020 | 3080383..3081036 | - | 654 | WP_023280291.1 | protein-serine/threonine phosphatase | - |
| H4I72_RS15025 | 3081193..3082161 | + | 969 | WP_074181864.1 | VirK/YbjX family protein | - |
| H4I72_RS15030 | 3082266..3082409 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3082777..3082922 | + | 146 | - | - | Antitoxin |
| - | 3082784..3082886 | - | 103 | - | - | Toxin |
| H4I72_RS15035 | 3083045..3083383 | - | 339 | WP_002911404.1 | YebY family protein | - |
| H4I72_RS15040 | 3083400..3084269 | - | 870 | WP_004891049.1 | copper homeostasis membrane protein CopD | - |
| H4I72_RS15045 | 3084273..3084647 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H4I72_RS15050 | 3084760..3084990 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H4I72_RS15055 | 3085069..3085728 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H4I72_RS15060 | 3085732..3087792 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173300 NZ_CP061965:c3082886-3082784 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT173300 NZ_CP061965:3082777-3082922 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
