Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3507719..3507864 | Replicon | chromosome |
| Accession | NZ_CP061961 | ||
| Organism | Klebsiella pneumoniae strain JNK002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3507726..3507828 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3507719..3507864 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H4I73_RS17660 | 3503251..3504684 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H4I73_RS17665 | 3504800..3505039 | + | 240 | WP_002911393.1 | YebV family protein | - |
| H4I73_RS17670 | 3505137..3505328 | + | 192 | WP_002911395.1 | YebW family protein | - |
| H4I73_RS17675 | 3505325..3505978 | - | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| H4I73_RS17680 | 3506135..3507103 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| H4I73_RS17685 | 3507208..3507351 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3507719..3507864 | + | 146 | - | - | Antitoxin |
| - | 3507726..3507828 | - | 103 | - | - | Toxin |
| H4I73_RS17690 | 3507987..3508325 | - | 339 | WP_002911404.1 | YebY family protein | - |
| H4I73_RS17695 | 3508342..3509211 | - | 870 | WP_019725445.1 | copper homeostasis membrane protein CopD | - |
| H4I73_RS17700 | 3509215..3509589 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| H4I73_RS17705 | 3509702..3509932 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| H4I73_RS17710 | 3510011..3510670 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| H4I73_RS17715 | 3510674..3512734 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173278 NZ_CP061961:c3507828-3507726 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT173278 NZ_CP061961:3507719-3507864 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
