Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 809639..810296 Replicon chromosome
Accession NZ_CP061948
Organism Klebsiella pneumoniae strain IR5065

Toxin (Protein)


Gene name cptA Uniprot ID W8UCT0
Locus tag H4I82_RS04080 Protein ID WP_002916310.1
Coordinates 809886..810296 (+) Length 137 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID W8UQ37
Locus tag H4I82_RS04075 Protein ID WP_002916312.1
Coordinates 809639..809905 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H4I82_RS04050 804795..806228 - 1434 WP_009485881.1 6-phospho-beta-glucosidase BglA -
H4I82_RS04055 806347..807075 - 729 WP_062920457.1 MurR/RpiR family transcriptional regulator -
H4I82_RS04060 807125..807436 + 312 WP_004144734.1 N(4)-acetylcytidine aminohydrolase -
H4I82_RS04065 807600..808259 + 660 WP_002916317.1 hemolysin III family protein -
H4I82_RS04070 808410..809393 - 984 WP_002916313.1 tRNA-modifying protein YgfZ -
H4I82_RS04075 809639..809905 + 267 WP_002916312.1 FAD assembly factor SdhE Antitoxin
H4I82_RS04080 809886..810296 + 411 WP_002916310.1 protein YgfX Toxin
H4I82_RS04085 810303..810824 - 522 WP_004144730.1 flavodoxin FldB -
H4I82_RS04090 810925..811821 + 897 WP_004144729.1 site-specific tyrosine recombinase XerD -
H4I82_RS04095 811844..812557 + 714 WP_062920458.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
H4I82_RS04100 812563..814296 + 1734 WP_062920459.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-132)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 137 a.a.        Molecular weight: 16049.85 Da        Isoelectric Point: 11.4778

>T173208 WP_002916310.1 NZ_CP061948:809886-810296 [Klebsiella pneumoniae]
VVLWQSDLRISWRAQWFSLLLHGVVAALVLLVPWPLSYTPIWLLLLSLVVFDCVRSQRRIHARRGEIKLLTDSRLRWQNA
EWEILGTPWVINSGMLLRLRHVDTRRGQHLWLAADSMDAGEWRDLRRLVLQKPAQE

Download         Length: 411 bp

>T173208 NZ_CP080119:c4264276-4264174 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10480.98 Da        Isoelectric Point: 5.1116

>AT173208 WP_002916312.1 NZ_CP061948:809639-809905 [Klebsiella pneumoniae]
MDINNKARIHWACRRGMRELDISIMPFFEYEYDTLSDADKQLFIRLLENDDPDLFNWLMNHGKPADAELQRMVTLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT173208 NZ_CP080119:4264136-4264404 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATATTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0H3GSW7

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GY41

References