Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) yoeB-relE/YoeB-RelB
Location 4225477..4226004 Replicon chromosome
Accession NZ_CP061947
Organism Algoriphagus sp. Y33

Toxin (Protein)


Gene name yoeB Uniprot ID -
Locus tag ID165_RS16905 Protein ID WP_192346273.1
Coordinates 4225750..4226004 (+) Length 85 a.a.

Antitoxin (Protein)


Gene name relE Uniprot ID -
Locus tag ID165_RS16900 Protein ID WP_192346271.1
Coordinates 4225477..4225737 (+) Length 87 a.a.

Genomic Context

ID165_RS16885ID165_RS16895ID165_RS16900ID165_RS16905ID165_RS16890ID165_RS16910ID165_RS16915
Location: 4221073..4222272 (1200 bp)
Type: Others
Protein ID: WP_192351624.1
Location: 4222937..4225390 (2454 bp)
Type: Others
Protein ID: WP_192346269.1
Location: 4225477..4225737 (261 bp)
Type: Antitoxin
Protein ID: WP_192346271.1
Location: 4225750..4226004 (255 bp)
Type: Toxin
Protein ID: WP_192346273.1
Location: 4222319..4222765 (447 bp)
Type: Others
Protein ID: WP_192346267.1
Location: 4226432..4228138 (1707 bp)
Type: Others
Protein ID: WP_192346275.1
Location: 4228212..4229399 (1188 bp)
Type: Others
Protein ID: WP_192346277.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
ID165_RS168854221073..4222272+1200WP_192351624.1winged helix DNA-binding domain-containing protein-
ID165_RS168904222319..4222765-447WP_192346267.1hypothetical protein-
ID165_RS168954222937..4225390+2454WP_192346269.1ABC transporter permease-
ID165_RS169004225477..4225737+261WP_192346271.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
ID165_RS169054225750..4226004+255WP_192346273.1Txe/YoeB family addiction module toxinToxin
ID165_RS169104226432..4228138-1707WP_192346275.1lysine--tRNA ligase-
ID165_RS169154228212..4229399-1188WP_192346277.1proline dehydrogenase family protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-72)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10158.66 Da        Isoelectric Point: 9.8062

>T173206 WP_192346273.1 NZ_CP061947:4225750-4226004 [Algoriphagus sp. Y33]
MNIIFSNRAWEDYLYWNATDKKIFKKINSLIKECQRTPFSGIGKPEPLKHELSGAWSRRIDREHRLVYRVKDDPLEIAQC
RHHY

Download         Length: 255 bp

>T173206 NZ_CP080119:c3674982-3674875 [Escherichia coli]
ATGACGCTCGCGCAGTTTGCCATGATTTTCTGGCACAACCTGGCGGCACCGATCCTGGCGGGGATTATTACCGCAGTGAT
TGTCAGCTGGTGGCGTAACCGGAAGTAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9886.02 Da        Isoelectric Point: 4.3217

>AT173206 WP_192346271.1 NZ_CP061947:4225477-4225737 [Algoriphagus sp. Y33]
MDVTTYSNFRQNLKSHLDDVVNDQKALYVTRANGEDVVVLSKSDYEGLQETYYLMRSPKNAERLMEALKELDEGGGIKRD
LIEIDE

Download         Length: 261 bp

>AT173206 NZ_CP080119:3675030-3675096 [Escherichia coli]
GTTCTGGTTCAAGATTAGCCCCCGTTCTGTTGTCAGGTTGTACCTCTCAACGTGCGGGGGTTTTCTC

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References