Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2188137..2188408 | Replicon | chromosome |
| Accession | NZ_CP061914 | ||
| Organism | Escherichia coli strain SMBL | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2188267..2188370 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2188137..2188408 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IE857_RS10525 | 2184692..2185354 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IE857_RS10530 | 2185378..2186034 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IE857_RS10535 | 2186136..2186366 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IE857_RS10540 | 2186505..2186879 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| IE857_RS10545 | 2186883..2187755 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IE857_RS10550 | 2187768..2188109 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2188137..2188408 | - | 272 | - | - | Antitoxin |
| - | 2188267..2188370 | + | 104 | - | - | Toxin |
| IE857_RS10555 | 2188505..2189161 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| IE857_RS10560 | 2189162..2189353 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IE857_RS10565 | 2189458..2189694 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IE857_RS10570 | 2189812..2191251 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2091093..2204247 | 113154 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T173151 NZ_CP061914:2188267-2188370 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT173151 NZ_CP061914:c2188408-2188137 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
