Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1810374..1810519 | Replicon | chromosome |
| Accession | NZ_CP061842 | ||
| Organism | Klebsiella pneumoniae strain HC139 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1810410..1810512 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1810374..1810519 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEY90_RS08850 | 1805504..1807564 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IEY90_RS08855 | 1807568..1808227 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IEY90_RS08860 | 1808306..1808536 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IEY90_RS08865 | 1808649..1809023 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| IEY90_RS08870 | 1809027..1809896 | + | 870 | WP_064148102.1 | copper homeostasis membrane protein CopD | - |
| IEY90_RS08875 | 1809913..1810251 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1810374..1810519 | - | 146 | - | - | Antitoxin |
| - | 1810410..1810512 | + | 103 | - | - | Toxin |
| IEY90_RS08880 | 1810888..1811031 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| IEY90_RS08885 | 1811136..1812104 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IEY90_RS08890 | 1812261..1812914 | + | 654 | WP_004175436.1 | protein-serine/threonine phosphatase | - |
| IEY90_RS08895 | 1812911..1813102 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IEY90_RS08900 | 1813200..1813439 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IEY90_RS08905 | 1813555..1814988 | - | 1434 | WP_021440382.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T173086 NZ_CP061842:1810410-1810512 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT173086 NZ_CP061842:c1810519-1810374 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
