Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2162465..2162736 | Replicon | chromosome |
| Accession | NZ_CP061764 | ||
| Organism | Escherichia coli O19:H7 strain 730V1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2162595..2162698 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2162465..2162736 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ID627_RS10545 | 2159020..2159682 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ID627_RS10550 | 2159706..2160362 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| ID627_RS10555 | 2160464..2160694 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ID627_RS10560 | 2160833..2161207 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| ID627_RS10565 | 2161211..2162083 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| ID627_RS10570 | 2162096..2162437 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2162465..2162736 | - | 272 | - | - | Antitoxin |
| - | 2162595..2162698 | + | 104 | - | - | Toxin |
| ID627_RS10575 | 2162833..2163489 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| ID627_RS10580 | 2163490..2163681 | - | 192 | WP_001313035.1 | YebW family protein | - |
| ID627_RS10585 | 2163786..2164022 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ID627_RS10590 | 2164140..2165579 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172959 NZ_CP061764:2162595-2162698 [Escherichia coli O19:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172959 NZ_CP061764:c2162736-2162465 [Escherichia coli O19:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
