Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2135838..2136109 | Replicon | chromosome |
| Accession | NZ_CP061754 | ||
| Organism | Escherichia coli O18ac:H14 strain 873.10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2135968..2136071 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2135838..2136109 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IEC99_RS10325 | 2132393..2133055 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IEC99_RS10330 | 2133079..2133735 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| IEC99_RS10335 | 2133837..2134067 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IEC99_RS10340 | 2134206..2134580 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| IEC99_RS10345 | 2134584..2135456 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| IEC99_RS10350 | 2135469..2135810 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2135838..2136109 | - | 272 | - | - | Antitoxin |
| - | 2135968..2136071 | + | 104 | - | - | Toxin |
| IEC99_RS10355 | 2136206..2136862 | + | 657 | WP_057107450.1 | protein-serine/threonine phosphatase | - |
| IEC99_RS10360 | 2136863..2137054 | - | 192 | WP_001313035.1 | YebW family protein | - |
| IEC99_RS10365 | 2137159..2137395 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IEC99_RS10370 | 2137513..2138952 | - | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172913 NZ_CP061754:2135968-2136071 [Escherichia coli O18ac:H14]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172913 NZ_CP061754:c2136109-2135838 [Escherichia coli O18ac:H14]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
