Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2445485..2445756 | Replicon | chromosome |
| Accession | NZ_CP061530 | ||
| Organism | Escherichia coli strain WEM25 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2445523..2445626 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2445485..2445756 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H5V41_RS11900 | 2442642..2444081 | + | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H5V41_RS11905 | 2444199..2444435 | + | 237 | WP_001338166.1 | DUF1480 family protein | - |
| H5V41_RS11910 | 2444540..2444731 | + | 192 | WP_001338167.1 | YebW family protein | - |
| H5V41_RS11915 | 2444732..2445388 | - | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| - | 2445485..2445756 | + | 272 | - | - | Antitoxin |
| - | 2445523..2445626 | - | 104 | - | - | Toxin |
| H5V41_RS11920 | 2445784..2446125 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H5V41_RS11925 | 2446138..2447010 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H5V41_RS11930 | 2447014..2447388 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H5V41_RS11935 | 2447527..2447757 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H5V41_RS11940 | 2447859..2448515 | + | 657 | WP_190811846.1 | carbon-nitrogen hydrolase family protein | - |
| H5V41_RS11945 | 2448539..2449201 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172718 NZ_CP061530:c2445626-2445523 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172718 NZ_CP061530:2445485-2445756 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATAGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
