Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3260307..3260452 | Replicon | chromosome |
| Accession | NZ_CP061404 | ||
| Organism | Klebsiella pneumoniae strain NU-CRE055 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3260314..3260416 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3260307..3260452 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCV81_RS16230 | 3255839..3257272 | + | 1434 | WP_040236949.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HCV81_RS16235 | 3257388..3257627 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HCV81_RS16240 | 3257725..3257916 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HCV81_RS16245 | 3257913..3258566 | - | 654 | WP_020802220.1 | protein-serine/threonine phosphatase | - |
| HCV81_RS16250 | 3258723..3259691 | + | 969 | WP_072158545.1 | VirK/YbjX family protein | - |
| HCV81_RS16255 | 3259796..3259939 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3260307..3260452 | + | 146 | - | - | Antitoxin |
| - | 3260314..3260416 | - | 103 | - | - | Toxin |
| HCV81_RS16260 | 3260575..3260913 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HCV81_RS16265 | 3260930..3261799 | - | 870 | WP_057774489.1 | copper homeostasis membrane protein CopD | - |
| HCV81_RS16270 | 3261803..3262177 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HCV81_RS16275 | 3262290..3262520 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HCV81_RS16280 | 3262599..3263258 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HCV81_RS16285 | 3263262..3265322 | - | 2061 | WP_040237002.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T172633 NZ_CP061404:c3260416-3260314 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT172633 NZ_CP061404:3260307-3260452 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
