Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2081800..2081945 | Replicon | chromosome |
| Accession | NZ_CP061389 | ||
| Organism | Klebsiella pneumoniae strain NU-CRE195 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2081836..2081938 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2081800..2081945 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCV84_RS10335 | 2076930..2078990 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| HCV84_RS10340 | 2078994..2079653 | - | 660 | WP_004180433.1 | exodeoxyribonuclease X | - |
| HCV84_RS10345 | 2079732..2079962 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HCV84_RS10350 | 2080075..2080449 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HCV84_RS10355 | 2080453..2081322 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HCV84_RS10360 | 2081339..2081677 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2081800..2081945 | - | 146 | - | - | Antitoxin |
| - | 2081836..2081938 | + | 103 | - | - | Toxin |
| HCV84_RS10365 | 2082314..2082457 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| HCV84_RS10370 | 2082562..2083530 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HCV84_RS10375 | 2083687..2084340 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| HCV84_RS10380 | 2084337..2084528 | - | 192 | WP_002911395.1 | YebW family protein | - |
| HCV84_RS10385 | 2084626..2084865 | - | 240 | WP_002911393.1 | YebV family protein | - |
| HCV84_RS10390 | 2084981..2086414 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T172574 NZ_CP061389:2081836-2081938 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT172574 NZ_CP061389:c2081945-2081800 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
