Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3921143..3921288 | Replicon | chromosome |
| Accession | NZ_CP061385 | ||
| Organism | Klebsiella pneumoniae strain NU-CRE213 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3921150..3921252 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3921143..3921288 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HCV85_RS19470 | 3916675..3918108 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| HCV85_RS19475 | 3918224..3918463 | + | 240 | WP_002911393.1 | YebV family protein | - |
| HCV85_RS19480 | 3918561..3918752 | + | 192 | WP_002911395.1 | YebW family protein | - |
| HCV85_RS19485 | 3918749..3919402 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| HCV85_RS19490 | 3919559..3920527 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| HCV85_RS19495 | 3920632..3920775 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3921143..3921288 | + | 146 | - | - | Antitoxin |
| - | 3921150..3921252 | - | 103 | - | - | Toxin |
| HCV85_RS19500 | 3921411..3921749 | - | 339 | WP_002911404.1 | YebY family protein | - |
| HCV85_RS19505 | 3921766..3922635 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| HCV85_RS19510 | 3922639..3923013 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| HCV85_RS19515 | 3923126..3923356 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| HCV85_RS19520 | 3923435..3924094 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| HCV85_RS19525 | 3924098..3926158 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T172557 NZ_CP061385:c3921252-3921150 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT172557 NZ_CP061385:3921143-3921288 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
