Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2545579..2545850 | Replicon | chromosome |
| Accession | NZ_CP061339 | ||
| Organism | Escherichia coli strain M00057 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2545617..2545720 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2545579..2545850 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IC755_RS12180 | 2542736..2544175 | + | 1440 | WP_188926226.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IC755_RS12185 | 2544293..2544529 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IC755_RS12190 | 2544634..2544825 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IC755_RS12195 | 2544826..2545482 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2545579..2545850 | + | 272 | - | - | Antitoxin |
| - | 2545617..2545720 | - | 104 | - | - | Toxin |
| IC755_RS12200 | 2545878..2546219 | - | 342 | WP_000976481.1 | YebY family protein | - |
| IC755_RS12205 | 2546232..2547104 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| IC755_RS12210 | 2547108..2547482 | - | 375 | WP_000168743.1 | CopC domain-containing protein YobA | - |
| IC755_RS12215 | 2547621..2547851 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IC755_RS12220 | 2547953..2548609 | + | 657 | WP_000011654.1 | carbon-nitrogen hydrolase family protein | - |
| IC755_RS12225 | 2548633..2549295 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2528516..2553159 | 24643 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172420 NZ_CP061339:c2545720-2545617 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172420 NZ_CP061339:2545579-2545850 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
