Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-YafN |
| Location | 2602376..2602892 | Replicon | chromosome |
| Accession | NZ_CP061335 | ||
| Organism | Pseudomonas asiatica strain C1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | F8G1E7 |
| Locus tag | ICJ54_RS11915 | Protein ID | WP_003259987.1 |
| Coordinates | 2602611..2602892 (+) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | F8G1E6 |
| Locus tag | ICJ54_RS11910 | Protein ID | WP_013972043.1 |
| Coordinates | 2602376..2602621 (+) | Length | 82 a.a. |
Genomic Context
Location: 2599802..2600995 (1194 bp)
Type: Others
Protein ID: WP_025338595.1
Type: Others
Protein ID: WP_025338595.1
Location: 2601026..2602132 (1107 bp)
Type: Others
Protein ID: WP_189121758.1
Type: Others
Protein ID: WP_189121758.1
Location: 2602376..2602621 (246 bp)
Type: Antitoxin
Protein ID: WP_013972043.1
Type: Antitoxin
Protein ID: WP_013972043.1
Location: 2602611..2602892 (282 bp)
Type: Toxin
Protein ID: WP_003259987.1
Type: Toxin
Protein ID: WP_003259987.1
Location: 2604675..2605919 (1245 bp)
Type: Others
Protein ID: WP_263407088.1
Type: Others
Protein ID: WP_263407088.1
Location: 2605950..2607191 (1242 bp)
Type: Others
Protein ID: WP_189121759.1
Type: Others
Protein ID: WP_189121759.1
Location: 2597788..2598267 (480 bp)
Type: Others
Protein ID: WP_085721567.1
Type: Others
Protein ID: WP_085721567.1
Location: 2598524..2599066 (543 bp)
Type: Others
Protein ID: WP_015269935.1
Type: Others
Protein ID: WP_015269935.1
Location: 2602932..2603327 (396 bp)
Type: Others
Protein ID: WP_023662326.1
Type: Others
Protein ID: WP_023662326.1
Location: 2603416..2604324 (909 bp)
Type: Others
Protein ID: WP_013972045.1
Type: Others
Protein ID: WP_013972045.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICJ54_RS11885 (ICJ54_11885) | 2597788..2598267 | - | 480 | WP_085721567.1 | transposase | - |
| ICJ54_RS11890 (ICJ54_11890) | 2598524..2599066 | - | 543 | WP_015269935.1 | WYL domain-containing protein | - |
| ICJ54_RS11900 (ICJ54_11900) | 2599802..2600995 | + | 1194 | WP_025338595.1 | MFS transporter | - |
| ICJ54_RS11905 (ICJ54_11905) | 2601026..2602132 | + | 1107 | WP_189121758.1 | alkene reductase | - |
| ICJ54_RS11910 (ICJ54_11910) | 2602376..2602621 | + | 246 | WP_013972043.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
| ICJ54_RS11915 (ICJ54_11915) | 2602611..2602892 | + | 282 | WP_003259987.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| ICJ54_RS11920 (ICJ54_11920) | 2602932..2603327 | - | 396 | WP_023662326.1 | hypothetical protein | - |
| ICJ54_RS11925 (ICJ54_11925) | 2603416..2604324 | - | 909 | WP_013972045.1 | LysR family transcriptional regulator | - |
| ICJ54_RS11930 (ICJ54_11930) | 2604675..2605919 | + | 1245 | WP_263407088.1 | MFS transporter | - |
| ICJ54_RS11935 (ICJ54_11935) | 2605950..2607191 | + | 1242 | WP_189121759.1 | Zn-dependent hydrolase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10909.78 Da Isoelectric Point: 10.7594
>T172372 WP_003259987.1 NZ_CP061335:2602611-2602892 [Pseudomonas asiatica]
MTYKLEFLPSALKEWGKLGHTVREQIKKKLAERLQSPKVQADALRDLPNHYKIKLKASGYRLVYRVEDERIVVVVVSVGK
RERSEVYRSAQKR
MTYKLEFLPSALKEWGKLGHTVREQIKKKLAERLQSPKVQADALRDLPNHYKIKLKASGYRLVYRVEDERIVVVVVSVGK
RERSEVYRSAQKR
Download Length: 282 bp
>T172372 NZ_CP079736:3634893-3635171 [Escherichia coli]
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA
ATGATTCAAAGGGATATTGAATACTCGGGACAATATTCAAAGGATGTAAAACTTGCACAAAAGCGTCATAAGGATATGAA
TAAATTGAAATATCTTATGACGCTTCTTATCAATAATACTTTACCGCTTCCAGCTGTTTATAAAGACCACCCGCTGCAAG
GTTCATGGAAAGGTTATCGCGATGCTCATGTCGAACCGGACTGGATCCTGATTTACAAACTTACCGATAAACTTTTACGA
TTTGAGAGAACTGGAACTCACGCGGCGCTCTTTGGGTAA
Antitoxin
Download Length: 82 a.a. Molecular weight: 8779.21 Da Isoelectric Point: 4.3611
>AT172372 WP_013972043.1 NZ_CP061335:2602376-2602621 [Pseudomonas asiatica]
MQNIFADVAVSVSELKKNPSAVMTGAAGMPVAVLNHNRVMGYMVPAELYEAMMERLEDLELSELAKSRLGEKGVPVSLDD
L
MQNIFADVAVSVSELKKNPSAVMTGAAGMPVAVLNHNRVMGYMVPAELYEAMMERLEDLELSELAKSRLGEKGVPVSLDD
L
Download Length: 246 bp
>AT172372 NZ_CP079736:3634630-3634890 [Escherichia coli]
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA
ATGGCTGCTAACGCGTTTGTTCGCGCCCGAATCGATGAAGATCTGAAGAATCAGGCAGCGGACGTACTGGCCGGGATGGG
GCTGACCATCTCTGACCTGGTTCGCATAACCCTCACAAAGGTCGCGCGTGAAAAGGCATTGCCGTTTGATTTACGCGAGC
CTAATCAATTAACCATTCAATCAATCAAAAACAGCGAAGCTGGCATTGATGTTCATAAGGCCAAAGACGCCGATGATTTA
TTTGATAAATTAGGAATTTAA