Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1998739..1999010 | Replicon | chromosome |
| Accession | NZ_CP061329 | ||
| Organism | Escherichia coli strain EC93 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1998869..1998972 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1998739..1999010 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H8529_RS09565 | 1995294..1995956 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H8529_RS09570 | 1995980..1996636 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| H8529_RS09575 | 1996738..1996968 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H8529_RS09580 | 1997107..1997481 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| H8529_RS09585 | 1997485..1998357 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H8529_RS09590 | 1998370..1998711 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1998739..1999010 | - | 272 | - | - | Antitoxin |
| - | 1998869..1998972 | + | 104 | - | - | Toxin |
| H8529_RS09595 | 1999107..1999763 | + | 657 | WP_188214211.1 | protein-serine/threonine phosphatase | - |
| H8529_RS09600 | 1999764..1999955 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H8529_RS09605 | 2000060..2000296 | - | 237 | WP_061892846.1 | DUF1480 family protein | - |
| H8529_RS09610 | 2000414..2001853 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172356 NZ_CP061329:1998869-1998972 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172356 NZ_CP061329:c1999010-1998739 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
