Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 2819481..2820001 Replicon chromosome
Accession NZ_CP061274
Organism Clavibacter zhangzhiyongii strain DM1

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag H9X71_RS13300 Protein ID WP_191147505.1
Coordinates 2819481..2819771 (-) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag H9X71_RS13305 Protein ID WP_191147506.1
Coordinates 2819768..2820001 (-) Length 78 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
H9X71_RS13280 2816572..2817354 + 783 WP_191149191.1 ferritin-like domain-containing protein -
H9X71_RS13285 2817432..2818235 + 804 WP_191147502.1 hypothetical protein -
H9X71_RS13290 2818348..2818632 - 285 WP_191147503.1 GlsB/YeaQ/YmgE family stress response membrane protein -
H9X71_RS13295 2818757..2819425 + 669 WP_191147504.1 response regulator transcription factor -
H9X71_RS13300 2819481..2819771 - 291 WP_191147505.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
H9X71_RS13305 2819768..2820001 - 234 WP_191147506.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
H9X71_RS13310 2820091..2821155 + 1065 WP_191147507.1 LD-carboxypeptidase -
H9X71_RS13315 2821163..2821678 + 516 WP_191147508.1 hypothetical protein -
H9X71_RS13320 2821701..2822765 - 1065 WP_191147509.1 glycosyltransferase family 9 protein -
H9X71_RS13325 2822913..2823767 + 855 WP_191147510.1 hypothetical protein -
H9X71_RS13330 2823918..2824583 - 666 WP_191147511.1 DedA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(4-72)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11222.50 Da        Isoelectric Point: 6.2273

>T172270 WP_191147505.1 NZ_CP061274:c2819771-2819481 [Clavibacter zhangzhiyongii]
VKPYRLTPAATKDLSEIWDYTEERWDADQAESYVREIGAAIERVAEDSLRGRDCGDIRPGYRRYGIGSHTVYYVDRPDTI
NVIRILHQRMDPSRHL

Download         Length: 291 bp

>T172270 NZ_CP079694:37200-37505 [Klebsiella pneumoniae subsp. pneumoniae]
ATGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACAC
GCCCGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGTCTCCCGTGAACTTTACCCGGTGG
TGCATATCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTG
GCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAA

Antitoxin


Download         Length: 78 a.a.        Molecular weight: 8282.21 Da        Isoelectric Point: 4.4000

>AT172270 WP_191147506.1 NZ_CP061274:c2820001-2819768 [Clavibacter zhangzhiyongii]
MAQNTSISLDGHFTGFLAREVESGRYRSASEVVRAGLRLLEDQETQLEALRAALIAGEASGEAAPFDLDAFIADKRA

Download         Length: 234 bp

>AT172270 NZ_CP079694:36980-37198 [Klebsiella pneumoniae subsp. pneumoniae]
ATGAAGCAGCGTATTACAGTGACAGTTGACAGCGACAGCTATCAGTTGCTCAAGGCATATGATGTCAATATCTCCGGTCT
GGTAAGCACAACCATGCAGAATGAAGCCCGTCGTCTGCGTGCCGAACGCTGGAAAGCGGAAAATCAGGAAGGGATGGCTG
AGGTCGCCCGGTTTATTGAAATGAACGGCTCTTTTGCTGACGAGAACAGGGACTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References