Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4286507..4286775 | Replicon | chromosome |
| Accession | NZ_CP061206 | ||
| Organism | Escherichia coli strain DA61218 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4286635..4286737 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4286507..4286775 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ICI53_RS19860 | 4283059..4283721 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| ICI53_RS19865 | 4283745..4284401 | - | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| ICI53_RS19870 | 4284504..4284734 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ICI53_RS19875 | 4284873..4285247 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| ICI53_RS19880 | 4285251..4286123 | + | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| ICI53_RS19885 | 4286136..4286477 | + | 342 | WP_000984819.1 | YebY family protein | - |
| - | 4286507..4286775 | - | 269 | - | - | Antitoxin |
| - | 4286635..4286737 | + | 103 | - | - | Toxin |
| ICI53_RS19890 | 4286872..4287528 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| ICI53_RS19895 | 4287529..4287720 | - | 192 | WP_001317886.1 | YebW family protein | - |
| ICI53_RS19900 | 4287825..4288061 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| ICI53_RS19905 | 4288179..4289618 | - | 1440 | WP_001704100.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T172246 NZ_CP061206:4286635-4286737 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT172246 NZ_CP061206:c4286775-4286507 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
