Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2636726..2636997 | Replicon | chromosome |
| Accession | NZ_CP061185 | ||
| Organism | Escherichia coli strain LD67-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2636764..2636867 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2636726..2636997 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IB283_RS12295 | 2633883..2635322 | + | 1440 | WP_188322730.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| IB283_RS12300 | 2635440..2635676 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IB283_RS12305 | 2635781..2635972 | + | 192 | WP_001296140.1 | YebW family protein | - |
| IB283_RS12310 | 2635973..2636629 | - | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| - | 2636726..2636997 | + | 272 | - | - | Antitoxin |
| - | 2636764..2636867 | - | 104 | - | - | Toxin |
| IB283_RS12315 | 2637025..2637366 | - | 342 | WP_000976472.1 | YebY family protein | - |
| IB283_RS12320 | 2637379..2638251 | - | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| IB283_RS12325 | 2638255..2638629 | - | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| IB283_RS12330 | 2638768..2638998 | + | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| IB283_RS12335 | 2639100..2639756 | + | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein | - |
| IB283_RS12340 | 2639780..2640442 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172184 NZ_CP061185:c2636867-2636764 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172184 NZ_CP061185:2636726-2636997 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
