Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2106639..2106910 | Replicon | chromosome |
| Accession | NZ_CP061108 | ||
| Organism | Escherichia coli strain 1EC187 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2106769..2106872 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2106639..2106910 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBZ91_RS09935 | 2103194..2103856 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IBZ91_RS09940 | 2103880..2104536 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IBZ91_RS09945 | 2104638..2104868 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IBZ91_RS09950 | 2105007..2105381 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IBZ91_RS09955 | 2105385..2106257 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IBZ91_RS09960 | 2106270..2106611 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2106639..2106910 | - | 272 | - | - | Antitoxin |
| - | 2106769..2106872 | + | 104 | - | - | Toxin |
| IBZ91_RS09965 | 2107007..2107663 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| IBZ91_RS09970 | 2107664..2107855 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IBZ91_RS09975 | 2107960..2108196 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IBZ91_RS09980 | 2108314..2109753 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172126 NZ_CP061108:2106769-2106872 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172126 NZ_CP061108:c2106910-2106639 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
