Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2022338..2022609 | Replicon | chromosome |
| Accession | NZ_CP061101 | ||
| Organism | Escherichia coli strain 1EC213 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2022468..2022571 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2022338..2022609 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IB009_RS09805 | 2018893..2019555 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| IB009_RS09810 | 2019579..2020235 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| IB009_RS09815 | 2020337..2020567 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| IB009_RS09820 | 2020706..2021080 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| IB009_RS09825 | 2021084..2021956 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| IB009_RS09830 | 2021969..2022310 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2022338..2022609 | - | 272 | - | - | Antitoxin |
| - | 2022468..2022571 | + | 104 | - | - | Toxin |
| IB009_RS09835 | 2022706..2023362 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| IB009_RS09840 | 2023363..2023554 | - | 192 | WP_001296140.1 | YebW family protein | - |
| IB009_RS09845 | 2023659..2023895 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| IB009_RS09850 | 2024013..2025452 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T172090 NZ_CP061101:2022468-2022571 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT172090 NZ_CP061101:c2022609-2022338 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
