Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pasABC/RelE-HTH
Location 2087201..2087678 Replicon chromosome
Accession NZ_CP061080
Organism Mesirhizobium sp. NIBR3 strain N3

Toxin (Protein)


Gene name pasB Uniprot ID -
Locus tag IAI54_RS09615 Protein ID WP_187972132.1
Coordinates 2087201..2087467 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name pasA Uniprot ID -
Locus tag IAI54_RS09620 Protein ID WP_187972133.1
Coordinates 2087451..2087678 (-) Length 76 a.a.

Genomic Context

IAI54_RS09590IAI54_RS09595IAI54_RS09635IAI54_RS09645IAI54_RS09600IAI54_RS09605IAI54_RS09610IAI54_RS09615IAI54_RS09620IAI54_RS09625IAI54_RS09630IAI54_RS09640
Location: 2083817..2084089 (273 bp)
Type: Others
Protein ID: WP_187972129.1
Location: 2084067..2084291 (225 bp)
Type: Others
Protein ID: WP_210321229.1
Location: 2089001..2089945 (945 bp)
Type: Others
Protein ID: WP_187972136.1
Location: 2091245..2092129 (885 bp)
Type: Others
Protein ID: WP_187973090.1
Location: 2084292..2085461 (1170 bp)
Type: Others
Protein ID: WP_187972130.1
Location: 2085458..2086558 (1101 bp)
Type: Others
Protein ID: WP_187973089.1
Location: 2086574..2087185 (612 bp)
Type: Others
Protein ID: WP_187972131.1
Location: 2087201..2087467 (267 bp)
Type: Toxin
Protein ID: WP_187972132.1
Location: 2087451..2087678 (228 bp)
Type: Antitoxin
Protein ID: WP_187972133.1
Location: 2087741..2088499 (759 bp)
Type: Others
Protein ID: WP_187972134.1
Location: 2088496..2088897 (402 bp)
Type: Others
Protein ID: WP_187972135.1
Location: 2089924..2091096 (1173 bp)
Type: Others
Protein ID: WP_187972137.1
ToxinAntitoxinOther genes
Loading, please wait
Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
IAI54_RS095902083817..2084089+273WP_187972129.1BrnT family toxin-
IAI54_RS095952084067..2084291+225WP_210321229.1CopG family transcriptional regulator-
IAI54_RS096002084292..2085461-1170WP_187972130.1MFS transporter-
IAI54_RS096052085458..2086558-1101WP_187973089.13-carboxy-cis,cis-muconate cycloisomerase-
IAI54_RS096102086574..2087185-612WP_187972131.1protocatechuate 3,4-dioxygenase subunit alpha-
IAI54_RS096152087201..2087467-267WP_187972132.1type II toxin-antitoxin system RelE/ParE family toxinToxin
IAI54_RS096202087451..2087678-228WP_187972133.1ribbon-helix-helix protein, CopG familyAntitoxin
IAI54_RS096252087741..2088499-759WP_187972134.1protocatechuate 3,4-dioxygenase subunit beta-
IAI54_RS096302088496..2088897-402WP_187972135.14-carboxymuconolactone decarboxylase-
IAI54_RS096352089001..2089945+945WP_187972136.1pca operon transcription factor PcaQ-
IAI54_RS096402089924..2091096-1173WP_187972137.14-hydroxybenzoate 3-monooxygenase-
IAI54_RS096452091245..2092129+885WP_187973090.1helix-turn-helix domain-containing protein-

Associated MGEs

Loading, please wait
MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-87)

Antitoxin

Protein of unknown function DUF6290

(1-70)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10273.95 Da        Isoelectric Point: 10.3110

>T172030 WP_187972132.1 NZ_CP061080:c2087467-2087201 [Mesirhizobium sp. NIBR3]
MAWTIELSDTAKKSLRKLDRQVSKRIAEFLRGRVALLDNPRTLGKALHASLENYWSYRVGDYRLVCEIRDKTLVVLVVEI
GHRSDIYR

Download         Length: 267 bp

>T172030 NZ_CP079155:4805942-4807264 [Klebsiella pneumoniae subsp. pneumoniae]
ATGGCGACGCTTACCACCTGGATGAACAATGTGCGCGTGGGAACCTTAACCCACCAGGCTAACGGGGCGCACAGTTTTCG
CTATGACGAAGAGTGGCTGCGCAGCCCGCGCGCCAGACCGCTCTCCCTCTCACTGCCGCTGCAGTATGGCAATATCACTG
CCGACGCGGTGTATCACTATTTTGATAACCTGCTGCCCGACAGCCCGCAGGTCCGCGACCGGATCGTCAGGCGCTATCAG
GCGCGCTCGAAGCAGCCGTTCGATCTGCTGGCCGAAGTCGGGCGGGATAGCGTAGGGGCGGTGACCCTCCTGCCGCCGGG
GGAAGAGGCGCACCTGGAAGGATTACGCTGGCAGACGCTGGACGAGGCGCAGCTCACCGCTTTGCTGACCGCTTACCAGT
CGGATATCCCCCTCGGGATGATTACCAGCCAGGACGATTTCCGTATCTCGGTGGCCGGCGCCCAGGAGAAAACGGCGCTG
CTGCGGATGGGCGAGCAGTGGTGTATTCCGCAGGGCGCCACGCCGACCACGCATATCATTAAGCTGCCCATCGGCGAGAT
AAAGCAGCCCAATGCGACGCTGGATCTGCGTGAAAGCGTGGATAATGAGTATCTGTGCCTGGCGCTGGCCAGAGAACTGG
GCCTGGCGGTGCCGGAAGCGGAGATCATCACCACTCCGCGGATCCGCGCCCTGGCGGTAACCCGCTTCGACCGGCGCTGG
GCGCAGGAGGGACGGGTGCTGCTGCGTCTGCCGCAGGAGGATCTGTGTCAGGCTTTTGGTCTTCCTTCAGCGATGAAATA
TGAGTCTGACGGCGGGCCGGGTATCGCCGCGATCATGACCTTTCTGCTGGGCTCGAGTGAAGCGCTGAAAGATCGCTATG
ACTTTATGAAGTTCATGGTCTTCCAGTGGCTGACGGGGGCGACGGACGGTCACGCAAAAAACTTCTCAATTTACCTGTTG
CCCGGCGGCAGCTACCGCTTAACACCGTTCTACGACATTATTTCGGCGTTTCCGGTGCTGGGCGGCACGGGACTGCATCT
GCGCGATCTGAAGCTGTCGATGGGGCTCAATGCCACAAAAGGGCGTAAAACAGAGATTAACGCCATCTATCCGCGTCATT
TTCTGGCGACGGCCAAAGCGGTGAACTTTCCCCGGGAGCAGATGCTGGCGATCCTCCAGGAGTTTGCCGGGCATGTGCCG
CAGGCAATCGAAAGCGCTCGCCGGACGCTGCCGGCGGACTTTTCCAGCCACGTCTGGCAGGCCATTACAGAGAACATGCT
GAAGCTGCACGCCCGCCTGCAGCAAGGGCTGCAGGCGCTATAG

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8730.76 Da        Isoelectric Point: 4.2403

>AT172030 WP_187972133.1 NZ_CP061080:c2087678-2087451 [Mesirhizobium sp. NIBR3]
MPTSIRLEPEIEARLDALAARTGRTKAYYLRQLITEGLDDLEDYYTAVEVSERIRRGEERTYPLEEVIRDLGLDD

Download         Length: 228 bp

>AT172030 NZ_CP079155:4805676-4805942 [Klebsiella pneumoniae subsp. pneumoniae]
ATGAATTCCCCGCAGATATACAGTCCCGTGCAGCTGGCCAATTACCTGAAGCTGCTGCGCCAGCAGAACCACTGGACCCA
GGATGCGCTGGCCAGGCGGATCGGCATTAAGCAGGCCACGCTGTCCAATTTTGAAAATCACCCCGACAAAACCACCTTAA
CCACGCTGTTTAAGATCCTCCAGTCGCTGGGGGTGGTGATGATGCTGAACGCCAAAGCTGCTGAGACGGCGCCGGCTCCC
GATAACAACACGGACCTTGACTGGTAA

Similar Proteins

Only experimentally validated proteins are listed.

Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
Loading, please wait
Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

Loading, please wait
Source
ID
Structure
No matching records found

Antitoxin

Loading, please wait
Source
ID
Structure
No matching records found

References