Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumAB/COG3657-dnstrm_HI1420
Location 551177..551783 Replicon chromosome
Accession NZ_CP061080
Organism Mesirhizobium sp. NIBR3 strain N3

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag IAI54_RS02545 Protein ID WP_187970862.1
Coordinates 551475..551783 (-) Length 103 a.a.

Antitoxin (Protein)


Gene name PumB Uniprot ID -
Locus tag IAI54_RS02540 Protein ID WP_187970861.1
Coordinates 551177..551482 (-) Length 102 a.a.

Genomic Context

IAI54_RS02510IAI54_RS02515IAI54_RS02525IAI54_RS02530IAI54_RS02560IAI54_RS02565IAI54_RS02520IAI54_RS02535IAI54_RS02540IAI54_RS02545IAI54_RS02550IAI54_RS02555
Location: 547001..547921 (921 bp)
Type: Others
Protein ID: WP_187972987.1
Location: 548235..549032 (798 bp)
Type: Others
Protein ID: WP_187970857.1
Location: 549551..549859 (309 bp)
Type: Others
Protein ID: Protein_485
Location: 549852..550157 (306 bp)
Type: Others
Protein ID: WP_187970859.1
Location: 554029..555549 (1521 bp)
Type: Others
Protein ID: WP_187970865.1
Location: 555645..556637 (993 bp)
Type: Others
Protein ID: WP_187970866.1
Location: 549098..549394 (297 bp)
Type: Others
Protein ID: WP_187970858.1
Location: 550268..551056 (789 bp)
Type: Others
Protein ID: WP_187970860.1
Location: 551177..551482 (306 bp)
Type: Antitoxin
Protein ID: WP_187970861.1
Location: 551475..551783 (309 bp)
Type: Toxin
Protein ID: WP_187970862.1
Location: 551926..553335 (1410 bp)
Type: Others
Protein ID: WP_187970863.1
Location: 553385..553723 (339 bp)
Type: Others
Protein ID: WP_187970864.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
IAI54_RS02510547001..547921+921WP_187972987.1TerC family protein-
IAI54_RS02515548235..549032+798WP_187970857.1sel1 repeat family protein-
IAI54_RS02520549098..549394-297WP_187970858.1hypothetical protein-
IAI54_RS02525549551..549859+309Protein_485type II toxin-antitoxin system RelE/ParE family toxin-
IAI54_RS02530549852..550157+306WP_187970859.1putative addiction module antidote protein-
IAI54_RS02535550268..551056-789WP_187970860.1exodeoxyribonuclease III-
IAI54_RS02540551177..551482-306WP_187970861.1putative addiction module antidote proteinAntitoxin
IAI54_RS02545551475..551783-309WP_187970862.1type II toxin-antitoxin system RelE/ParE family toxinToxin
IAI54_RS02550551926..553335-1410WP_187970863.1type I glutamate--ammonia ligase-
IAI54_RS02555553385..553723-339WP_187970864.1P-II family nitrogen regulator-
IAI54_RS02560554029..555549+1521WP_187970865.1NAD(P)H-hydrate dehydratase-
IAI54_RS02565555645..556637+993WP_187970866.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin HigB-like

(19-83)

Antitoxin

Uncharacterized protein HI1420

(4-94)


Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11442.94 Da        Isoelectric Point: 10.7140

>T172029 WP_187970862.1 NZ_CP061080:c551783-551475 [Mesirhizobium sp. NIBR3]
MLDLKQTETFRKWWMRLGDERARGVIFSRLDRLAYGHVGDVRPVGDGVSELRIHHGPGYRVYFQRRGDTIVVLLCGGDKS
TQARGTSGPRSALRRNGASEDG

Download         Length: 309 bp

>T172029 NZ_CP079155:3557455-3557772 [Klebsiella pneumoniae subsp. pneumoniae]
ATGTTCAGATTGGTTGTGCATGTGGACGTTAAAAAGGAATTGCAGGCGCTTCCGCCCATTGTCCAGGCGAAGATGATCCG
GCAATTAGACAAGTTACGCCAAAATCCCACCGCGCTGAGAGAACCTGACAGTAAACCGCTGGGGCAGGGGCTATTTGAAA
TTCGTGCGTTAGGTTCGGTACAGGGGCGAGGGATCTACGTTTTTCAGCAAGGCAAGACGCTCTTTCTGCTACGGGTTTTT
GTCAAGAAAACGCAAAAAACCCCGTCATCGGAAATTCGCCTGGCGCTGAAGCGATTAGAGGAGATGCGCAATGAGTAA

Antitoxin


Download         Length: 102 a.a.        Molecular weight: 10724.20 Da        Isoelectric Point: 5.6882

>AT172029 WP_187970861.1 NZ_CP061080:c551482-551177 [Mesirhizobium sp. NIBR3]
MAEKLTTFDPAEGLTSNEAAAAFMAEAFASEDAGYIAHALGVVARATGMTRIARETGLSREQLYRSFSADGNPTLKTTLL
VMKALGIELTARSPAHRPEPL

Download         Length: 306 bp

>AT172029 NZ_CP079155:3557765-3558052 [Klebsiella pneumoniae subsp. pneumoniae]
ATGAGTAAAAAGATCATTGACTGGGATACGTTAAAAACAGAACTGCTTGGCCAGCCTGAGGTTCAGGCTGCATTCGATGC
GCAAGAACGTCAACAGCGATTACGTACTATGCTGGCGCAATGGCGCGAGCAGGCGGGGCTAACCCGAGCCCAGGTGGCGC
AGAGGATGGGGGTGAGTGCGCCAACGGTCTCCAGAATGGAAGCCAATATCACCCGCGCCAGTCTGGATACCTTAACGCGA
TACGCGTTAGCCTGCGGTATAAAGCACCCGCAAGTTTTACTTTACTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References