Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1203454..1203599 | Replicon | chromosome |
| Accession | NZ_CP061062 | ||
| Organism | Klebsiella pneumoniae strain HKP0018 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1203490..1203592 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1203454..1203599 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBX29_RS05620 | 1198584..1200644 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IBX29_RS05625 | 1200648..1201307 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IBX29_RS05630 | 1201386..1201616 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IBX29_RS05635 | 1201729..1202103 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| IBX29_RS05640 | 1202107..1202976 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| IBX29_RS05645 | 1202993..1203331 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1203454..1203599 | - | 146 | - | - | Antitoxin |
| - | 1203490..1203592 | + | 103 | - | - | Toxin |
| IBX29_RS05650 | 1203968..1204111 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| IBX29_RS05655 | 1204216..1205184 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IBX29_RS05660 | 1205341..1205994 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| IBX29_RS05665 | 1205991..1206182 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IBX29_RS05670 | 1206280..1206519 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IBX29_RS05675 | 1206635..1208068 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T171992 NZ_CP061062:1203490-1203592 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT171992 NZ_CP061062:c1203599-1203454 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
