Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056184..2056329 | Replicon | chromosome |
| Accession | NZ_CP061053 | ||
| Organism | Klebsiella pneumoniae strain HKP0067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056220..2056322 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056184..2056329 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IBX31_RS09925 | 2051314..2053374 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| IBX31_RS09930 | 2053378..2054037 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| IBX31_RS09935 | 2054116..2054346 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| IBX31_RS09940 | 2054459..2054833 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| IBX31_RS09945 | 2054837..2055706 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| IBX31_RS09950 | 2055723..2056061 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2056184..2056329 | - | 146 | - | - | Antitoxin |
| - | 2056220..2056322 | + | 103 | - | - | Toxin |
| IBX31_RS09955 | 2056698..2056841 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| IBX31_RS09960 | 2056946..2057914 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| IBX31_RS09965 | 2058071..2058724 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| IBX31_RS09970 | 2058721..2058912 | - | 192 | WP_002911395.1 | YebW family protein | - |
| IBX31_RS09975 | 2059010..2059249 | - | 240 | WP_002911393.1 | YebV family protein | - |
| IBX31_RS09980 | 2059365..2060798 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T171976 NZ_CP061053:2056220-2056322 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT171976 NZ_CP061053:c2056329-2056184 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
