Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2281112..2281638 | Replicon | chromosome |
| Accession | NZ_CP060979 | ||
| Organism | Escherichia coli strain EC3 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | H9191_RS11290 | Protein ID | WP_000323025.1 |
| Coordinates | 2281351..2281638 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | H9191_RS11285 | Protein ID | WP_000534858.1 |
| Coordinates | 2281112..2281351 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9191_RS11250 (2276840) | 2276840..2277070 | - | 231 | Protein_2209 | IS66 family insertion sequence element accessory protein TnpB | - |
| H9191_RS11255 (2277076) | 2277076..2277198 | - | 123 | Protein_2210 | transposase | - |
| H9191_RS11260 (2277441) | 2277441..2277862 | + | 422 | Protein_2211 | hypothetical protein | - |
| H9191_RS11265 (2278518) | 2278518..2279540 | + | 1023 | Protein_2212 | ISNCY family transposase | - |
| H9191_RS11270 (2279661) | 2279661..2279810 | + | 150 | WP_011443592.1 | protein YdfW | - |
| H9191_RS11275 (2280247) | 2280247..2280579 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| H9191_RS11280 (2280782) | 2280782..2281087 | - | 306 | WP_001326990.1 | protein YdfV | - |
| H9191_RS11285 (2281112) | 2281112..2281351 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| H9191_RS11290 (2281351) | 2281351..2281638 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| H9191_RS11295 (2281710) | 2281710..2281865 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| H9191_RS11300 (2282082) | 2282082..2282333 | + | 252 | WP_000980994.1 | protein Rem | - |
| H9191_RS11305 (2282400) | 2282400..2282678 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| H9191_RS11310 (2282680) | 2282680..2283729 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| H9191_RS11315 (2283743) | 2283743..2284495 | + | 753 | WP_001047135.1 | antitermination protein | - |
| H9191_RS11320 (2284773) | 2284773..2284862 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| H9191_RS11325 (2284917) | 2284917..2285129 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| H9191_RS11330 (2285430) | 2285430..2285645 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| H9191_RS11335 (2286009) | 2286009..2286179 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| H9191_RS11340 (2286399) | 2286399..2286614 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2258572..2299476 | 40904 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T171867 WP_000323025.1 NZ_CP060979:2281351-2281638 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T171867 NZ_CP078145:2593830-2594222 [Nocardia iowensis]
GTGAACGCTGAGCAGGCGCTGGCTGATACCTCTGTTTTCATCGGCTTGGAAGCGGAACGCTTCGATCCGGCGCTGATCGA
GGGATATGAGTGGGGCGTCTCAGTGATCACCTTGGGTGAACTGCGCTTGGGCGTTCTTCATGCGACCGATCCGGAGTCGG
CGGCGCGACGGCTGTCGACATACCAGCTGGCGCAACGGTTTCAGCCGTTGGAAGTAGACGAAACAGTCGCCGAGCATTGG
GCGCTGCTCGTCTCGCGCTTGCGGGCGGCCGGACGCAAAGTGCCGATAAATGACAGCTGGATCGCGGCCACCGCAATGGC
CTACAACATCCCCATCGTGACCCAGGATGGCGATTACGCTGCCATGACGGATTTGCGGATCATCAAGCTCTGA
GTGAACGCTGAGCAGGCGCTGGCTGATACCTCTGTTTTCATCGGCTTGGAAGCGGAACGCTTCGATCCGGCGCTGATCGA
GGGATATGAGTGGGGCGTCTCAGTGATCACCTTGGGTGAACTGCGCTTGGGCGTTCTTCATGCGACCGATCCGGAGTCGG
CGGCGCGACGGCTGTCGACATACCAGCTGGCGCAACGGTTTCAGCCGTTGGAAGTAGACGAAACAGTCGCCGAGCATTGG
GCGCTGCTCGTCTCGCGCTTGCGGGCGGCCGGACGCAAAGTGCCGATAAATGACAGCTGGATCGCGGCCACCGCAATGGC
CTACAACATCCCCATCGTGACCCAGGATGGCGATTACGCTGCCATGACGGATTTGCGGATCATCAAGCTCTGA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT171867 WP_000534858.1 NZ_CP060979:2281112-2281351 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT171867 NZ_CP078145:2593579-2593833 [Nocardia iowensis]
ATGACAGCTCTGCCCGCCCGTGATCTCCGCAATCACACCGCGGAGATCCTCCGACGGGTCGAAGCCGGAGAAGAGATCGA
AATCCTGAAGGACAACCGTCCGGTGGCGAAGATCATCCCGCTACCTCGGCGGAGGCAATGGATTCCGGCGTCGGAAATAG
TCAAGGAACTGGTCCGGCTCGGGCCGGATAGCACGGGTCTCAGCGAAGAGTTGCGCGAAACCCTGACCGAGACAACGGAT
GACCTGCGGTGGTGA
ATGACAGCTCTGCCCGCCCGTGATCTCCGCAATCACACCGCGGAGATCCTCCGACGGGTCGAAGCCGGAGAAGAGATCGA
AATCCTGAAGGACAACCGTCCGGTGGCGAAGATCATCCCGCTACCTCGGCGGAGGCAATGGATTCCGGCGTCGGAAATAG
TCAAGGAACTGGTCCGGCTCGGGCCGGATAGCACGGGTCTCAGCGAAGAGTTGCGCGAAACCCTGACCGAGACAACGGAT
GACCTGCGGTGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|