Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2055006..2055277 | Replicon | chromosome |
| Accession | NZ_CP060969 | ||
| Organism | Escherichia coli strain EC5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2055136..2055239 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2055006..2055277 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9193_RS09945 | 2051561..2052223 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9193_RS09950 | 2052247..2052903 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9193_RS09955 | 2053005..2053235 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9193_RS09960 | 2053374..2053748 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9193_RS09965 | 2053752..2054624 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| H9193_RS09970 | 2054637..2054978 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2055006..2055277 | - | 272 | - | - | Antitoxin |
| - | 2055136..2055239 | + | 104 | - | - | Toxin |
| H9193_RS09975 | 2055374..2056030 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| H9193_RS09980 | 2056031..2056222 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H9193_RS09985 | 2056327..2056563 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9193_RS09990 | 2056681..2058120 | - | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1982284..2071892 | 89608 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171786 NZ_CP060969:2055136-2055239 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171786 NZ_CP060969:c2055277-2055006 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
