Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 1797548..1798379 | Replicon | chromosome |
| Accession | NZ_CP060963 | ||
| Organism | Escherichia coli strain EC7 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | H9194_RS08625 | Protein ID | WP_192847775.1 |
| Coordinates | 1797548..1797922 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | F4THW5 |
| Locus tag | H9194_RS08630 | Protein ID | WP_001313071.1 |
| Coordinates | 1798011..1798379 (-) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9194_RS08585 (1792944) | 1792944..1794110 | + | 1167 | WP_001310935.1 | serine-type D-Ala-D-Ala carboxypeptidase DacD | - |
| H9194_RS08590 (1794229) | 1794229..1794702 | + | 474 | WP_001105393.1 | DNA gyrase inhibitor SbmC | - |
| H9194_RS08595 (1794900) | 1794900..1795958 | + | 1059 | WP_001200905.1 | FUSC family protein | - |
| H9194_RS08600 (1796130) | 1796130..1796459 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| H9194_RS08605 (1796560) | 1796560..1796784 | - | 225 | WP_000917607.1 | EutP/PduV family microcompartment system protein | - |
| H9194_RS08610 (1796796) | 1796796..1796942 | + | 147 | Protein_1689 | transposase domain-containing protein | - |
| H9194_RS08615 (1797231) | 1797231..1797311 | - | 81 | Protein_1690 | hypothetical protein | - |
| H9194_RS08620 (1797357) | 1797357..1797551 | - | 195 | WP_000988600.1 | DUF5983 family protein | - |
| H9194_RS08625 (1797548) | 1797548..1797922 | - | 375 | WP_192847775.1 | type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA | Toxin |
| H9194_RS08630 (1798011) | 1798011..1798379 | - | 369 | WP_001313071.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| H9194_RS08635 (1798459) | 1798459..1798680 | - | 222 | WP_000692323.1 | DUF987 domain-containing protein | - |
| H9194_RS08640 (1798743) | 1798743..1799219 | - | 477 | WP_001186773.1 | RadC family protein | - |
| H9194_RS08645 (1799235) | 1799235..1799714 | - | 480 | WP_000860076.1 | antirestriction protein | - |
| H9194_RS08650 (1799796) | 1799796..1800617 | - | 822 | WP_001234530.1 | DUF932 domain-containing protein | - |
| H9194_RS08655 (1800838) | 1800838..1801248 | - | 411 | WP_000846713.1 | hypothetical protein | - |
| H9194_RS08660 (1801264) | 1801264..1801947 | - | 684 | WP_000775500.1 | hypothetical protein | - |
| H9194_RS08665 (1802083) | 1802083..1803153 | - | 1071 | WP_000102643.1 | patatin-like phospholipase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 13900.91 Da Isoelectric Point: 7.8522
>T171751 WP_192847775.1 NZ_CP060963:c1797922-1797548 [Escherichia coli]
MKTLPVLPGQAASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPVLPGQAASSRPSPVEIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T171751 NZ_CP078094:324595-324936 [Enterococcus lactis]
GTGTCAGAAGAAAGAATTTATATTCCTAAAAAAGGTGATATTGTGTGGATTGATTTTGATCCTTCGGTAGGAAAAGAAAT
TCAAAAAAGACGACCAGGACTAGTCGTCTCTCGTTATGAGTTTAATCGTAAAACAATGTTTTCGGTCATATGTCCGATTA
CTTCCACGATAAAGAATTTACCGACACGTTACTCATTACCAGAAGAGCTAGATATAAAAGGACAAGTACTTATTTCTCAA
TTAAAATCACTTGATTTTAAGGAACGAAGACTCAAAAAAATAGAAAACCTGCCATTGCAAGACATGGCTAAAATTGATCA
GATTATACAATATATGTTTTAA
GTGTCAGAAGAAAGAATTTATATTCCTAAAAAAGGTGATATTGTGTGGATTGATTTTGATCCTTCGGTAGGAAAAGAAAT
TCAAAAAAGACGACCAGGACTAGTCGTCTCTCGTTATGAGTTTAATCGTAAAACAATGTTTTCGGTCATATGTCCGATTA
CTTCCACGATAAAGAATTTACCGACACGTTACTCATTACCAGAAGAGCTAGATATAAAAGGACAAGTACTTATTTCTCAA
TTAAAATCACTTGATTTTAAGGAACGAAGACTCAAAAAAATAGAAAACCTGCCATTGCAAGACATGGCTAAAATTGATCA
GATTATACAATATATGTTTTAA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13498.23 Da Isoelectric Point: 5.8696
>AT171751 WP_001313071.1 NZ_CP060963:c1798379-1798011 [Escherichia coli]
VSDTLSGTTHPDDNNSHPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPEMKN
VSDTLSGTTHPDDNNSHPWWGLPCTVTPCFGACLVQEGNRLHYLADRAGIRGRFSDADAYHLDQAFPLLMKQLELMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPEMKN
Download Length: 369 bp
>AT171751 NZ_CP078094:324365-324595 [Enterococcus lactis]
ATGCTTGTTACAAAATCTAGATTACAAGGAAGTTCTGTAGTGGTTACTTTACCTTCTGATAACGGAAAGAAACCTTCAGA
AAACCAAGAATATATCGTTGTATATTCTGACGATGGGACAATTACGTTAGTTCCAAAAATTGAAGATCCATTTAGTGGTG
GAGAAGAGGCCGAATATTATGAAAAAGACGAATGGGAAGATTTAACTCCTGAAGGGAGAGAAAGGTTATAG
ATGCTTGTTACAAAATCTAGATTACAAGGAAGTTCTGTAGTGGTTACTTTACCTTCTGATAACGGAAAGAAACCTTCAGA
AAACCAAGAATATATCGTTGTATATTCTGACGATGGGACAATTACGTTAGTTCCAAAAATTGAAGATCCATTTAGTGGTG
GAGAAGAGGCCGAATATTATGAAAAAGACGAATGGGAAGATTTAACTCCTGAAGGGAGAGAAAGGTTATAG
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|