Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4676827..4677098 | Replicon | chromosome |
| Accession | NZ_CP060950 | ||
| Organism | Escherichia coli strain EC9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4676865..4676968 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4676827..4677098 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9196_RS22470 | 4673984..4675423 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H9196_RS22475 | 4675541..4675777 | + | 237 | WP_001295499.1 | YebV family protein | - |
| H9196_RS22480 | 4675882..4676073 | + | 192 | WP_001296140.1 | YebW family protein | - |
| H9196_RS22485 | 4676074..4676730 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 4676827..4677098 | + | 272 | - | - | Antitoxin |
| - | 4676865..4676968 | - | 104 | - | - | Toxin |
| H9196_RS22490 | 4677126..4677467 | - | 342 | WP_000976472.1 | YebY family protein | - |
| H9196_RS22495 | 4677480..4678352 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H9196_RS22500 | 4678356..4678730 | - | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| H9196_RS22505 | 4678869..4679099 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9196_RS22510 | 4679201..4679857 | + | 657 | WP_241407744.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9196_RS22515 | 4679881..4680543 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171700 NZ_CP060950:c4676968-4676865 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171700 NZ_CP060950:4676827-4677098 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
