Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2710647..2710918 | Replicon | chromosome |
| Accession | NZ_CP060938 | ||
| Organism | Escherichia coli strain EC11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2710777..2710880 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2710647..2710918 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9198_RS12995 | 2707202..2707864 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9198_RS13000 | 2707888..2708544 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9198_RS13005 | 2708646..2708876 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9198_RS13010 | 2709015..2709389 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9198_RS13015 | 2709393..2710265 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H9198_RS13020 | 2710278..2710619 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2710647..2710918 | - | 272 | - | - | Antitoxin |
| - | 2710777..2710880 | + | 104 | - | - | Toxin |
| H9198_RS13025 | 2711015..2711671 | + | 657 | Protein_2539 | protein-serine/threonine phosphatase | - |
| H9198_RS13030 | 2711672..2711863 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H9198_RS13035 | 2711968..2712204 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9198_RS13040 | 2712322..2713761 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2705145..2716474 | 11329 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171628 NZ_CP060938:2710777-2710880 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171628 NZ_CP060938:c2710918-2710647 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
