Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 980747..981018 | Replicon | chromosome |
| Accession | NZ_CP060928 | ||
| Organism | Escherichia coli strain EC13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 980785..980888 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 980747..981018 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9200_RS04905 | 977904..979343 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| H9200_RS04910 | 979461..979697 | + | 237 | WP_001295499.1 | YebV family protein | - |
| H9200_RS04915 | 979802..979993 | + | 192 | WP_000457842.1 | YebW family protein | - |
| H9200_RS04920 | 979994..980650 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 980747..981018 | + | 272 | - | - | Antitoxin |
| - | 980785..980888 | - | 104 | - | - | Toxin |
| H9200_RS04925 | 981046..981387 | - | 342 | WP_000976476.1 | YebY family protein | - |
| H9200_RS04930 | 981400..982272 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H9200_RS04935 | 982276..982650 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9200_RS04940 | 982789..983019 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9200_RS04945 | 983121..983777 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9200_RS04950 | 983801..984463 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171561 NZ_CP060928:c980888-980785 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171561 NZ_CP060928:980747-981018 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
