Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2106259..2106530 | Replicon | chromosome |
| Accession | NZ_CP060902 | ||
| Organism | Escherichia coli strain EC20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2106389..2106492 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2106259..2106530 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9205_RS10115 | 2102814..2103476 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9205_RS10120 | 2103500..2104156 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9205_RS10125 | 2104258..2104488 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9205_RS10130 | 2104627..2105001 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H9205_RS10135 | 2105005..2105877 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H9205_RS10140 | 2105890..2106231 | + | 342 | WP_157297535.1 | YebY family protein | - |
| - | 2106259..2106530 | - | 272 | - | - | Antitoxin |
| - | 2106389..2106492 | + | 104 | - | - | Toxin |
| H9205_RS10145 | 2106627..2107283 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H9205_RS10150 | 2107284..2107475 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H9205_RS10155 | 2107580..2107816 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9205_RS10160 | 2107934..2109373 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171411 NZ_CP060902:2106389-2106492 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171411 NZ_CP060902:c2106530-2106259 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
