Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2067215..2067486 | Replicon | chromosome |
| Accession | NZ_CP060892 | ||
| Organism | Escherichia coli strain EC22 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2067345..2067448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2067215..2067486 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9207_RS09955 | 2063770..2064432 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9207_RS09960 | 2064456..2065112 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9207_RS09965 | 2065214..2065444 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9207_RS09970 | 2065583..2065957 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| H9207_RS09975 | 2065961..2066833 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| H9207_RS09980 | 2066846..2067187 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2067215..2067486 | - | 272 | - | - | Antitoxin |
| - | 2067345..2067448 | + | 104 | - | - | Toxin |
| H9207_RS09985 | 2067583..2068239 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H9207_RS09990 | 2068240..2068431 | - | 192 | WP_000457842.1 | YebW family protein | - |
| H9207_RS09995 | 2068536..2068772 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9207_RS10000 | 2068890..2070329 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171354 NZ_CP060892:2067345-2067448 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171354 NZ_CP060892:c2067486-2067215 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
