Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 2334070..2334596 | Replicon | chromosome |
| Accession | NZ_CP060880 | ||
| Organism | Escherichia coli strain EC26 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | S1EXL1 |
| Locus tag | H9209_RS11375 | Protein ID | WP_000323025.1 |
| Coordinates | 2334309..2334596 (+) | Length | 96 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | S1F6D3 |
| Locus tag | H9209_RS11370 | Protein ID | WP_000534858.1 |
| Coordinates | 2334070..2334309 (+) | Length | 80 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9209_RS11335 (2329429) | 2329429..2329776 | - | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| H9209_RS11340 (2329773) | 2329773..2330177 | - | 405 | WP_000839179.1 | transposase | - |
| H9209_RS11345 (2330399) | 2330399..2330820 | + | 422 | Protein_2227 | hypothetical protein | - |
| H9209_RS11350 (2331476) | 2331476..2332498 | + | 1023 | Protein_2228 | ISNCY family transposase | - |
| H9209_RS11355 (2332619) | 2332619..2332768 | + | 150 | WP_011443592.1 | protein YdfW | - |
| H9209_RS11360 (2333205) | 2333205..2333537 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| H9209_RS11365 (2333740) | 2333740..2334045 | - | 306 | WP_001326990.1 | protein YdfV | - |
| H9209_RS11370 (2334070) | 2334070..2334309 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin |
| H9209_RS11375 (2334309) | 2334309..2334596 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin |
| H9209_RS11380 (2334668) | 2334668..2334823 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| H9209_RS11385 (2335040) | 2335040..2335291 | + | 252 | WP_000980994.1 | protein Rem | - |
| H9209_RS11390 (2335358) | 2335358..2335636 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| H9209_RS11395 (2335638) | 2335638..2336687 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| H9209_RS11400 (2336701) | 2336701..2337171 | + | 471 | Protein_2238 | antitermination protein | - |
| H9209_RS11405 (2337226) | 2337226..2337923 | + | 698 | WP_106423973.1 | IS1 family transposase | - |
| H9209_RS11410 (2337937) | 2337937..2338041 | - | 105 | Protein_2240 | putative zinc-binding protein YnfU | - |
| H9209_RS11415 (2338261) | 2338261..2338476 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| H9209_RS11420 (2338481) | 2338481..2338792 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| H9209_RS11425 (2338789) | 2338789..2339322 | + | 534 | WP_001092971.1 | lysozyme | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2306755..2370245 | 63490 | |
| - | flank | IS/Tn | - | - | 2337630..2337923 | 293 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 96 a.a. Molecular weight: 11225.22 Da Isoelectric Point: 10.1967
>T171303 WP_000323025.1 NZ_CP060880:2334309-2334596 [Escherichia coli]
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKLRGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGK
RERSEVYSEAVKRIL
Download Length: 288 bp
>T171303 NZ_CP077880:575494-575646 [Staphylococcus aureus]
ATGTCTAAAGACAAAGATCCAAAATTAAATTATCATGAAGAAGAAAACAGTATGGTAACGGATTTTGAAGATTTAAAAGA
ATTAGGTAAAGAAATGGAACAAATCTCTGATCAAAATGATCAAGAAAAGAATTCTGAAGAAGACAGTCAGTAA
ATGTCTAAAGACAAAGATCCAAAATTAAATTATCATGAAGAAGAAAACAGTATGGTAACGGATTTTGAAGATTTAAAAGA
ATTAGGTAAAGAAATGGAACAAATCTCTGATCAAAATGATCAAGAAAAGAATTCTGAAGAAGACAGTCAGTAA
Antitoxin
Download Length: 80 a.a. Molecular weight: 9071.48 Da Isoelectric Point: 4.5230
>AT171303 WP_000534858.1 NZ_CP060880:2334070-2334309 [Escherichia coli]
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERLPFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL
Download Length: 240 bp
>AT171303 NZ_CP077880:574870-575469 [Staphylococcus aureus]
ATGGCAATGAACTTTAAAGTCTTTGACAATAGTCAACTTGTAGCAGAATATGCTGCTGATATTATTAGAAAGCAATTTAA
CAATAATCCTACTACAATTGCAGGTTTTCATTTAGATACAGATCAAGCGCCAGTTCTAGATGAATTAAAGAAAAATGTTG
AAAAACATGCTGTTGATTTTAGCCAAATAAATATTTTAGATTATGACGATAAAAAATCATATTTCGAAGCGTTAGGTGTA
CCAGCAGGTCAAGTTTATCCAATTGCTTATGAAAAAGATGCAATCGAATTAATCGCTGATAAGATTAAAACTAAAGAAAA
TAAAGGGAAATTAACATTACAAGTTGTTTCTATCGATGAGCAAGGTAAGTTAAATGTTAGTATTCGTCAAGGACTAATGG
AAGCAAGAGAAATTTTCTTAGTAGTGACAGGTGCTAATAAACGAGATGTAGTTGAAAAATTATATCAAGAAAATGGTAAA
ACAAGCTTCGAACCAGCCGATTTAAAAGCACATAGAATGGTAAATGTTATTCTTGATAAAGAAGCGGCTGCAGGTTTACC
TGAAGATGTTAAAGCTTACTTTACGTCACGCTTTGCTTAA
ATGGCAATGAACTTTAAAGTCTTTGACAATAGTCAACTTGTAGCAGAATATGCTGCTGATATTATTAGAAAGCAATTTAA
CAATAATCCTACTACAATTGCAGGTTTTCATTTAGATACAGATCAAGCGCCAGTTCTAGATGAATTAAAGAAAAATGTTG
AAAAACATGCTGTTGATTTTAGCCAAATAAATATTTTAGATTATGACGATAAAAAATCATATTTCGAAGCGTTAGGTGTA
CCAGCAGGTCAAGTTTATCCAATTGCTTATGAAAAAGATGCAATCGAATTAATCGCTGATAAGATTAAAACTAAAGAAAA
TAAAGGGAAATTAACATTACAAGTTGTTTCTATCGATGAGCAAGGTAAGTTAAATGTTAGTATTCGTCAAGGACTAATGG
AAGCAAGAGAAATTTTCTTAGTAGTGACAGGTGCTAATAAACGAGATGTAGTTGAAAAATTATATCAAGAAAATGGTAAA
ACAAGCTTCGAACCAGCCGATTTAAAAGCACATAGAATGGTAAATGTTATTCTTGATAAAGAAGCGGCTGCAGGTTTACC
TGAAGATGTTAAAGCTTACTTTACGTCACGCTTTGCTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|