Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2096154..2096425 | Replicon | chromosome |
| Accession | NZ_CP060873 | ||
| Organism | Escherichia coli strain EC27 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2096284..2096387 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2096154..2096425 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H9210_RS10040 | 2092709..2093371 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| H9210_RS10045 | 2093395..2094051 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| H9210_RS10050 | 2094153..2094383 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| H9210_RS10055 | 2094522..2094896 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| H9210_RS10060 | 2094900..2095772 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| H9210_RS10065 | 2095785..2096126 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2096154..2096425 | - | 272 | - | - | Antitoxin |
| - | 2096284..2096387 | + | 104 | - | - | Toxin |
| H9210_RS10070 | 2096522..2097178 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| H9210_RS10075 | 2097179..2097370 | - | 192 | WP_001296140.1 | YebW family protein | - |
| H9210_RS10080 | 2097475..2097711 | - | 237 | WP_001295499.1 | YebV family protein | - |
| H9210_RS10085 | 2097829..2099268 | - | 1440 | WP_241424627.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T171266 NZ_CP060873:2096284-2096387 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT171266 NZ_CP060873:c2096425-2096154 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
